[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

Artificial intelligence in cancer immunotherapy: applications in neoantigen recognition, antibody design and immunotherapy response prediction

T Li, Y Li, X Zhu, Y He, Y Wu, T Ying, Z Xie - Seminars in Cancer Biology, 2023 - Elsevier
Cancer immunotherapy is a method of controlling and eliminating tumors by reactivating the
body's cancer-immunity cycle and restoring its antitumor immune response. The increased …

Reverse vaccinology approach to design a novel multi-epitope vaccine candidate against COVID-19: an in silico study

M Enayatkhani, M Hasaniazad, S Faezi… - Journal of …, 2021 - Taylor & Francis
Abstract At present, novel Coronavirus (2019-nCoV, the causative agent of COVID-19) has
caused worldwide social and economic disruption. The disturbing statistics of this infection …

c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont

M Xu, M Pokrovskii, Y Ding, R Yi, C Au, OJ Harrison… - Nature, 2018 - nature.com
Both microbial and host genetic factors contribute to the pathogenesis of autoimmune
diseases,,,. There is accumulating evidence that microbial species that potentiate chronic …

TepiTool: a pipeline for computational prediction of T cell epitope candidates

S Paul, J Sidney, A Sette… - Current protocols in …, 2016 - Wiley Online Library
Computational prediction of T cell epitope candidates is currently being used in several
applications including vaccine discovery studies, development of diagnostics, and removal …

HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

S Paul, D Weiskopf, MA Angelo, J Sidney… - The Journal of …, 2013 - journals.aai.org
Prediction of HLA binding affinity is widely used to identify candidate T cell epitopes, and an
affinity of 500 nM is routinely used as a threshold for peptide selection. However, the fraction …

Immunoinformatics analysis and in silico designing of a novel multi-epitope peptide vaccine against Staphylococcus aureus

N Hajighahramani, N Nezafat, M Eslami… - Infection, Genetics and …, 2017 - Elsevier
Staphylococcus aureus is a pathogen that causes a variety of infections in humans.
Methicillin-resistant S. aureus, which is an antibiotic-resistant form, is responsible for …

[HTML][HTML] DNA vaccination partially protects against African swine fever virus lethal challenge in the absence of antibodies

JM Argilaguet, E Pérez-Martín, M Nofrarías, C Gallardo… - 2012 - journals.plos.org
The lack of available vaccines against African swine fever virus (ASFV) means that the
evaluation of new immunization strategies is required. Here we show that fusion of the …

Unsupervised HLA peptidome deconvolution improves ligand prediction accuracy and predicts cooperative effects in peptide–HLA interactions

M Bassani-Sternberg, D Gfeller - The Journal of Immunology, 2016 - journals.aai.org
Ag presentation on HLA molecules plays a central role in infectious diseases and tumor
immunology. To date, large-scale identification of (neo-) Ags from DNA sequencing data has …

Use of plant viruses and virus-like particles for the creation of novel vaccines

I Balke, A Zeltins - Advanced drug delivery reviews, 2019 - Elsevier
In recent decades, the development of plant virology and genetic engineering techniques
has resulted in the construction of plant virus-based vaccines for protection against different …