Ppisb: a novel network-based algorithm of predicting protein-protein interactions with mixed membership stochastic blockmodel

X Wang, W Yang, Y Yang, Y He, J Zhang… - IEEE/ACM …, 2022 - ieeexplore.ieee.org
Protein-protein interactions (PPIs) play an essential role for most of biological processes in
cells. Many computational algorithms have thus been proposed to predict PPIs. However …

Predicting protein-protein interactions using sequence and network information via variational graph autoencoder

X Luo, L Wang, P Hu, L Hu - IEEE/ACM Transactions on …, 2023 - ieeexplore.ieee.org
Protein-protein interactions (PPIs) play a critical role in the proteomics study, and a variety of
computational algorithms have been developed to predict PPIs. Though effective, their …

Pseudo Gradient-Adjusted Particle Swarm Optimization for Accurate Adaptive Latent Factor Analysis

X Luo, J Chen, Y Yuan, Z Wang - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
A latent factor analysis (LFA) model can be efficiently built via the stochastic gradient
descent (SGD) algorithm to address high-dimensional and incomplete (HDI) data generated …

Single-Cell RNA-Seq Debiased Clustering via Batch Effect Disentanglement

Y Li, Y Lin, P Hu, D Peng, H Luo… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
A variety of single-cell RNA-seq (scRNA-seq) clustering methods has achieved great
success in discovering cellular phenotypes. However, it remains challenging when the data …

Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks

X Meng, W Li, J Xiang, HD Bedru… - … on Network Science …, 2022 - ieeexplore.ieee.org
Hubs are generally defined as nodes with a high degree centrality, and they are important
for maintaining the stability of complex networks. Previous studies have shown that hub …

Late Embryogenesis Abundant Proteins Contribute to the Resistance of Toxoplasma gondii Oocysts against Environmental Stresses

D Arranz-Solís, D Warschkau, BT Fabian, F Seeber… - Mbio, 2023 - Am Soc Microbiol
Toxoplasma gondii oocysts, which are shed in large quantities in the feces from infected
felines, are very stable in the environment, resistant to most inactivation procedures, and …

[HTML][HTML] Graph regularized non-negative matrix factorization with norm regularization terms for drug–target interactions prediction

J Zhang, M Xie - BMC bioinformatics, 2023 - Springer
Background Identifying drug–target interactions (DTIs) plays a key role in drug development.
Traditional wet experiments to identify DTIs are costly and time consuming. Effective …

[HTML][HTML] An improved graph isomorphism network for accurate prediction of drug–drug interactions

S Wang, X Su, B Zhao, P Hu, T Bai, L Hu - Mathematics, 2023 - mdpi.com
Drug–drug interaction (DDI) prediction is one of the essential tasks in drug development to
ensure public health and patient safety. Drug combinations with potentially severe DDIs …

Dynamical representation learning for Ethereum transaction network via non-negative adaptive latent factorization of tensors

Z Lin, H Wu - 2021 International Conference on Cyber-Physical …, 2021 - ieeexplore.ieee.org
As a common cryptocurrency platform, Ethereum involves massive accounts and numerous
real-time transactions. Moreover, as the involved accounts increase drastically, it is …

Predicting drug-disease associations via meta-path representation learning based on heterogeneous information net works

ML Zhang, BW Zhao, L Hu, ZH You… - … Conference on Intelligent …, 2022 - Springer
Identifying new indications of drugs plays an important role in the drug research and
development process. However, traditional methods are labor-intensive and financially …