Ppisb: a novel network-based algorithm of predicting protein-protein interactions with mixed membership stochastic blockmodel
X Wang, W Yang, Y Yang, Y He, J Zhang… - IEEE/ACM …, 2022 - ieeexplore.ieee.org
Protein-protein interactions (PPIs) play an essential role for most of biological processes in
cells. Many computational algorithms have thus been proposed to predict PPIs. However …
cells. Many computational algorithms have thus been proposed to predict PPIs. However …
Predicting protein-protein interactions using sequence and network information via variational graph autoencoder
Protein-protein interactions (PPIs) play a critical role in the proteomics study, and a variety of
computational algorithms have been developed to predict PPIs. Though effective, their …
computational algorithms have been developed to predict PPIs. Though effective, their …
Pseudo Gradient-Adjusted Particle Swarm Optimization for Accurate Adaptive Latent Factor Analysis
A latent factor analysis (LFA) model can be efficiently built via the stochastic gradient
descent (SGD) algorithm to address high-dimensional and incomplete (HDI) data generated …
descent (SGD) algorithm to address high-dimensional and incomplete (HDI) data generated …
Single-Cell RNA-Seq Debiased Clustering via Batch Effect Disentanglement
A variety of single-cell RNA-seq (scRNA-seq) clustering methods has achieved great
success in discovering cellular phenotypes. However, it remains challenging when the data …
success in discovering cellular phenotypes. However, it remains challenging when the data …
Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks
Hubs are generally defined as nodes with a high degree centrality, and they are important
for maintaining the stability of complex networks. Previous studies have shown that hub …
for maintaining the stability of complex networks. Previous studies have shown that hub …
Late Embryogenesis Abundant Proteins Contribute to the Resistance of Toxoplasma gondii Oocysts against Environmental Stresses
D Arranz-Solís, D Warschkau, BT Fabian, F Seeber… - Mbio, 2023 - Am Soc Microbiol
Toxoplasma gondii oocysts, which are shed in large quantities in the feces from infected
felines, are very stable in the environment, resistant to most inactivation procedures, and …
felines, are very stable in the environment, resistant to most inactivation procedures, and …
[HTML][HTML] Graph regularized non-negative matrix factorization with norm regularization terms for drug–target interactions prediction
J Zhang, M Xie - BMC bioinformatics, 2023 - Springer
Background Identifying drug–target interactions (DTIs) plays a key role in drug development.
Traditional wet experiments to identify DTIs are costly and time consuming. Effective …
Traditional wet experiments to identify DTIs are costly and time consuming. Effective …
[HTML][HTML] An improved graph isomorphism network for accurate prediction of drug–drug interactions
Drug–drug interaction (DDI) prediction is one of the essential tasks in drug development to
ensure public health and patient safety. Drug combinations with potentially severe DDIs …
ensure public health and patient safety. Drug combinations with potentially severe DDIs …
Dynamical representation learning for Ethereum transaction network via non-negative adaptive latent factorization of tensors
Z Lin, H Wu - 2021 International Conference on Cyber-Physical …, 2021 - ieeexplore.ieee.org
As a common cryptocurrency platform, Ethereum involves massive accounts and numerous
real-time transactions. Moreover, as the involved accounts increase drastically, it is …
real-time transactions. Moreover, as the involved accounts increase drastically, it is …
Predicting drug-disease associations via meta-path representation learning based on heterogeneous information net works
Identifying new indications of drugs plays an important role in the drug research and
development process. However, traditional methods are labor-intensive and financially …
development process. However, traditional methods are labor-intensive and financially …