Machine-learning methods for ligand–protein molecular docking

K Crampon, A Giorkallos, M Deldossi, S Baud… - Drug discovery today, 2022 - Elsevier
Artificial intelligence (AI) is often presented as a new Industrial Revolution. Many domains
use AI, including molecular simulation for drug discovery. In this review, we provide an …

[HTML][HTML] Deep learning in virtual screening: recent applications and developments

TB Kimber, Y Chen, A Volkamer - International journal of molecular …, 2021 - mdpi.com
Drug discovery is a cost and time-intensive process that is often assisted by computational
methods, such as virtual screening, to speed up and guide the design of new compounds …

fastDRH: a webserver to predict and analyze protein–ligand complexes based on molecular docking and MM/PB (GB) SA computation

Z Wang, H Pan, H Sun, Y Kang, H Liu… - Briefings in …, 2022 - academic.oup.com
Predicting the native or near-native binding pose of a small molecule within a protein
binding pocket is an extremely important task in structure-based drug design, especially in …

Relevance of molecular docking studies in drug designing

R Jakhar, M Dangi, A Khichi… - Current …, 2020 - ingentaconnect.com
Molecular Docking is used to positioning the computer-generated 3D structure of small
ligands into a receptor structure in a variety of orientations, conformations and positions …

Critical assessment of AI in drug discovery

WP Walters, R Barzilay - Expert opinion on drug discovery, 2021 - Taylor & Francis
ABSTRACT Introduction: Artificial Intelligence (AI) has become a component of our everyday
lives, with applications ranging from recommendations on what to buy to the analysis of …

[HTML][HTML] Molecular modeling insights into the structure and behavior of Integrins: a review

I Tvaroška, S Kozmon, J Kóňa - Cells, 2023 - mdpi.com
Integrins are heterodimeric glycoproteins crucial to the physiology and pathology of many
biological functions. As adhesion molecules, they mediate immune cell trafficking, migration …

A comprehensive review on recent approaches for cancer drug discovery associated with artificial intelligence

S Pandiyan, L Wang - Computers in Biology and Medicine, 2022 - Elsevier
Through the revolutionization of artificial intelligence (AI) technologies in clinical research,
significant improvement is observed in diagnosis of cancer. Utilization of these AI …

Featurization strategies for protein–ligand interactions and their applications in scoring function development

G Xiong, C Shen, Z Yang, D Jiang, S Liu… - Wiley …, 2022 - Wiley Online Library
The predictive performance of classical scoring functions (SFs) seems to have reached a
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …

[HTML][HTML] Application of the SwissDrugDesign online resources in virtual screening

A Daina, V Zoete - International journal of molecular sciences, 2019 - mdpi.com
SwissDrugDesign is an important initiative led by the Molecular Modeling Group of the SIB
Swiss Institute of Bioinformatics. This project provides a collection of freely available online …

ToDD: Topological compound fingerprinting in computer-aided drug discovery

A Demir, B Coskunuzer, Y Gel… - Advances in …, 2022 - proceedings.neurips.cc
In computer-aided drug discovery (CADD), virtual screening (VS) is used for comparing a
library of compounds against known active ligands to identify the drug candidates that are …