Genotypic resistance testing of HIV-1 DNA in peripheral blood mononuclear cells

C Chu, D Armenia, C Walworth… - Clinical Microbiology …, 2022 - Am Soc Microbiol
SUMMARY HIV-1 DNA exists in nonintegrated linear and circular episomal forms and as
integrated proviruses. In patients with plasma viremia, most peripheral blood mononuclear …

Human APOBEC3 variations and viral infection

S Sadeghpour, S Khodaee, M Rahnama, H Rahimi… - Viruses, 2021 - mdpi.com
Human APOBEC3 (apolipoprotein B mRNA-editing catalytic polypeptide-like 3) enzymes
are capable of inhibiting a wide range of endogenous and exogenous viruses using …

Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

PL Tzou, K Tao, SLK Pond, RW Shafer - Plos one, 2022 - journals.plos.org
As novel SARS-CoV-2 variants with different patterns of spike protein mutations have
emerged, the susceptibility of these variants to neutralization by antibodies has been rapidly …

Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations

S Ávila-Ríos, N Parkin, R Swanstrom, R Paredes… - Viruses, 2020 - mdpi.com
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …

Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genotyping

NT Parkin, S Avila-Rios, DF Bibby, CJ Brumme… - Viruses, 2020 - mdpi.com
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genotyping. NGS methods have the potential for a more sensitive detection of low …

Inflammatory profile of vertically HIV-1 infected adolescents receiving ART in Cameroon: a contribution toward optimal pediatric HIV control strategies

AC Ka'e, AJ Nanfack, G Ambada, MM Santoro… - Frontiers in …, 2023 - frontiersin.org
Antiretroviral therapy (ART) has improved the lifespan of people living with HIV. However,
their immune system remains in a state of sustained activation/inflammation, which favors …

HIV-1 Drug Resistance Detected by Next-Generation Sequencing among ART-Naïve Individuals: A Systematic Review and Meta-Analysis

F Ouyang, D Yuan, W Zhai, S Liu, Y Zhou, H Yang - Viruses, 2024 - mdpi.com
Background: There are an increasing number of articles focused on the prevalence and
clinical impact of pretreatment HIV drug resistance (PDR) detected by Sanger sequencing …

Use of genotypic HIV DNA testing: a DELPHI-type consensus

E Andre-Garnier, L Bocket, T Bourlet… - Journal of …, 2024 - academic.oup.com
Objectives As many disparities in the clinical use of HIV DNA sequencing are observed, a
DELPHI-type consensus was initiated in France to homogenize use, techniques and …

[HTML][HTML] Sierra SARS-CoV-2 sequence and antiviral resistance analysis program

PL Tzou, K Tao, MK Sahoo, SLK Pond… - Journal of Clinical …, 2022 - Elsevier
Introduction Although most laboratories are capable of employing established protocols to
perform full-genome SARS-CoV-2 sequencing, many are unable to assess sequence …

Patterns of pretreatment drug resistance mutations of very early diagnosed and treated infants in Botswana

NO Moraka, P Garcia-Broncano, Z Hu, G Ajibola… - Aids, 2021 - journals.lww.com
Objective: To describe the occurrence of HIV drug resistance mutations (DRMs) in both
intact and defective HIV-1 cell-associated DNA (HIV-1 CAD) among early-treated infants …