SCAM detective: accurate predictor of small, colloidally aggregating molecules
Small, colloidally aggregating molecules (SCAMs) are the most common source of false
positives in high-throughput screening (HTS) campaigns. Although SCAMs can be …
positives in high-throughput screening (HTS) campaigns. Although SCAMs can be …
Growing PAINS in academic drug discovery
A Whitty - Future medicinal chemistry, 2011 - Taylor & Francis
In a recent article it was argued that compounds published as drug leads by academic
laboratories commonly contain functionality that identifies them as nonspecific 'pan-assay …
laboratories commonly contain functionality that identifies them as nonspecific 'pan-assay …
An empirical process for the design of high-throughput screening deck filters
BC Pearce, MJ Sofia, AC Good… - Journal of chemical …, 2006 - ACS Publications
A process for objective identification and filtering of undesirable compounds that contribute
to high-throughput screening (HTS) deck promiscuity is described. Two methods of mapping …
to high-throughput screening (HTS) deck promiscuity is described. Two methods of mapping …
Chemokine receptor antagonists: part 2
Background: The first part of this two-part review discussed approaches to generating
antagonists for some of the CC chemokine receptors, including CCR1, CCR2, CCR3, and …
antagonists for some of the CC chemokine receptors, including CCR1, CCR2, CCR3, and …
The food colorant erythrosine is a promiscuous protein–protein interaction inhibitor
L Ganesan, E Margolles-Clark, Y Song… - Biochemical …, 2011 - Elsevier
Following our observation that erythrosine B (FD&C Red No. 3) is a relatively potent inhibitor
of the TNF-R–TNFα and CD40–CD154 protein–protein interactions, we investigated …
of the TNF-R–TNFα and CD40–CD154 protein–protein interactions, we investigated …
Colloid formation by drugs in simulated intestinal fluid
AK Doak, H Wille, SB Prusiner… - Journal of medicinal …, 2010 - ACS Publications
Many organic molecules form colloidal aggregates in aqueous solution at micromolar
concentrations. These aggregates promiscuously inhibit soluble proteins and are a major …
concentrations. These aggregates promiscuously inhibit soluble proteins and are a major …
Enhancement of chemical rules for predicting compound reactivity towards protein thiol groups
JT Metz, JR Huth, PJ Hajduk - Journal of computer-aided molecular design, 2007 - Springer
Non-specific chemical modification of protein thiol groups continues to be a significant
source of false positive hits from high-throughput screening campaigns and can even …
source of false positive hits from high-throughput screening campaigns and can even …
[HTML][HTML] On the interpretation and interpretability of quantitative structure–activity relationship models
R Guha - Journal of computer-aided molecular design, 2008 - Springer
The goal of a quantitative structure–activity relationship (QSAR) model is to encode the
relationship between molecular structure and biological activity or physical property. Based …
relationship between molecular structure and biological activity or physical property. Based …
Ensemble methods for classification in cheminformatics
C Merkwirth, H Mauser, T Schulz-Gasch… - Journal of chemical …, 2004 - ACS Publications
We describe the application of ensemble methods to binary classification problems on two
pharmaceutical compound data sets. Several variants of single and ensembles models of k …
pharmaceutical compound data sets. Several variants of single and ensembles models of k …
Structure-based inhibition of protein–protein interactions
AM Watkins, PS Arora - European journal of medicinal chemistry, 2015 - Elsevier
Protein–protein interactions (PPIs) are emerging as attractive targets for drug design
because of their central role in directing normal and aberrant cellular functions. These …
because of their central role in directing normal and aberrant cellular functions. These …