First steps in the analysis of prokaryotic pan-genomes
SS Costa, LC Guimarães, A Silva… - … and Biology Insights, 2020 - journals.sagepub.com
Pan-genome is defined as the set of orthologous and unique genes of a specific group of
organisms. The pan-genome is composed by the core genome, accessory genome, and …
organisms. The pan-genome is composed by the core genome, accessory genome, and …
Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies
HB Hassler, B Probert, C Moore, E Lawson… - Microbiome, 2022 - Springer
Abstract Background The 16S rRNA gene is used extensively in bacterial phylogenetics, in
species delineation, and now widely in microbiome studies. However, the gene suffers from …
species delineation, and now widely in microbiome studies. However, the gene suffers from …
Identification of Streptococcus pneumoniae and other Mitis streptococci: importance of molecular methods
E Sadowy, W Hryniewicz - European Journal of Clinical Microbiology & …, 2020 - Springer
The Mitis group of streptococci includes an important human pathogen, Streptococcus
pneumoniae (pneumococcus) and about 20 other related species with much lower …
pneumoniae (pneumococcus) and about 20 other related species with much lower …
Accurate reconstruction of bacterial pan-and core genomes with PEPPAN
Z Zhou, J Charlesworth, M Achtman - Genome research, 2020 - genome.cshlp.org
Bacterial genomes can contain traces of a complex evolutionary history, including extensive
homologous recombination, gene loss, gene duplications, and horizontal gene transfer. To …
homologous recombination, gene loss, gene duplications, and horizontal gene transfer. To …
Topic Application of the Probiotic Streptococcus dentisani Improves Clinical and Microbiological Parameters Associated With Oral Health
MD Ferrer, A López-López, T Nicolescu… - Frontiers in Cellular …, 2020 - frontiersin.org
Streptococcus dentisani 7746, isolated from dental plaque of caries-free individuals, has
been shown to have several beneficial effects in vitro which could contribute to promote oral …
been shown to have several beneficial effects in vitro which could contribute to promote oral …
Mechanisms underlying interactions between two abundant oral commensal bacteria
D Perera, A McLean, V Morillo-López… - The ISME …, 2022 - academic.oup.com
Complex polymicrobial biofilm communities are abundant in nature particularly in the human
oral cavity where their composition and fitness can affect health. While the study of these …
oral cavity where their composition and fitness can affect health. While the study of these …
Site‐tropism of streptococci in the oral microbiome
AR McLean, J Torres‐Morales… - Molecular oral …, 2022 - Wiley Online Library
A detailed understanding of where bacteria localize is necessary to advance microbial
ecology and microbiome‐based therapeutics. The site‐specialist hypothesis predicts that …
ecology and microbiome‐based therapeutics. The site‐specialist hypothesis predicts that …
Maintenance tobramycin primarily affects untargeted bacteria in the CF sputum microbiome
MT Nelson, DJ Wolter, A Eng, EJ Weiss, AT Vo… - Thorax, 2020 - thorax.bmj.com
Rationale The most common antibiotic used to treat people with cystic fibrosis (PWCF) is
inhaled tobramycin, administered as maintenance therapy for chronic Pseudomonas …
inhaled tobramycin, administered as maintenance therapy for chronic Pseudomonas …
High conservation of the dental plaque microbiome across populations with differing subsistence strategies and levels of market integration
IM Velsko, S Gallois, R Stahl, AG Henry… - Molecular …, 2023 - Wiley Online Library
Industrialization—including urbanization, participation in the global food chain and
consumption of heavily processed foods—is thought to drive substantial shifts in the human …
consumption of heavily processed foods—is thought to drive substantial shifts in the human …
Genomic relatedness and clinical significance of Streptococcus mitis strains isolated from the urogenital tract of sexual partners
CR Mores, TK Price, B Wolff… - Microbial …, 2021 - microbiologyresearch.org
Research into the lower urinary tract (LUT) microbiota has primarily focused on its
relationship to LUT symptoms (LUTS), taking snapshots of these communities in individuals …
relationship to LUT symptoms (LUTS), taking snapshots of these communities in individuals …