Signatures of discriminative copy number aberrations in 31 cancer subtypes
B Gao, M Baudis - Frontiers in genetics, 2021 - frontiersin.org
Copy number aberrations (CNA) are one of the most important classes of genomic mutations
related to oncogenetic effects. In the past three decades, a vast amount of CNA data has …
related to oncogenetic effects. In the past three decades, a vast amount of CNA data has …
From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis
M Najm, L Martignetti, M Cornet, M Kelly-Aubert… - BMC genomics, 2024 - Springer
Abstract Background Cystic Fibrosis (CF) is a monogenic disease caused by mutations in
the gene coding the Cystic Fibrosis Transmembrane Regulator (CFTR) protein, but its …
the gene coding the Cystic Fibrosis Transmembrane Regulator (CFTR) protein, but its …
Identification of phenotype-specific networks from paired gene expression–cell shape imaging data
The morphology of breast cancer cells is often used as an indicator of tumor severity and
prognosis. Additionally, morphology can be used to identify more fine-grained, molecular …
prognosis. Additionally, morphology can be used to identify more fine-grained, molecular …
Modeling in systems biology: Causal understanding before prediction?
Modeling in systems biology: Causal understanding before prediction?: Patterns Skip to Main
Content Advertisement Patterns All content is freely available to readers and supported …
Content Advertisement Patterns All content is freely available to readers and supported …
SiRCle (Signature Regulatory Clustering) model integration reveals mechanisms of phenotype regulation in renal cancer
Clear cell renal cell carcinoma (ccRCC) tumours develop and progress via complex
remodelling of the kidney epigenome, transcriptome, proteome, and metabolome. Given the …
remodelling of the kidney epigenome, transcriptome, proteome, and metabolome. Given the …
Modeling causal signal propagation in multi-omic factor space with COSMOS
Understanding complex diseases requires approaches that jointly analyze omic data across
multiple biological layers, including signaling, gene regulation, and metabolism. Existing …
multiple biological layers, including signaling, gene regulation, and metabolism. Existing …
Convergent Transcriptomic Evidence Reveals the Dysfunctional Quantitative Mechanism of Synaptic Plasticity Control in ASD
C Kong, ZT Bing, L Yang, ZG Huang, WX Wang - bioRxiv, 2023 - biorxiv.org
A prominent endophenotype in Autism Spectrum Disorder (ASD) is synaptic plasticity
dysfunction, yet the molecular mechanism remains elusive. As a prototype, we investigated …
dysfunction, yet the molecular mechanism remains elusive. As a prototype, we investigated …
Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer
L Veghini, D Pasini, P Delfino, R Fang, D Filippini… - bioRxiv, 2023 - biorxiv.org
Fibroblast heterogeneity is increasingly recognised across cancer conditions. Given their
important contribution to disease progression, mapping out fibroblasts' heterogeneity is …
important contribution to disease progression, mapping out fibroblasts' heterogeneity is …
Application of perturbation gene expression profiles in drug discovery—From mechanism of action to quantitative modelling
High dimensional characterization of drug targets, compound effects and disease
phenotypes are crucial for increased efficiency of drug discovery. High-throughput gene …
phenotypes are crucial for increased efficiency of drug discovery. High-throughput gene …
Dynamic multi-omics and mechanistic modeling of kidney fibrosis progression
N Tüchler - 2024 - archiv.ub.uni-heidelberg.de
Chronic kidney disease (CKD) affects more than 10% of the world's population and causes
millions of deaths annually. Organ fibrosis is the main driver of the pathology underlying …
millions of deaths annually. Organ fibrosis is the main driver of the pathology underlying …