Using biological and chemical information to improve understanding of drug mechanism of action on the systems-level

L Hosseini-Gerami - 2022 - repository.cam.ac.uk
The understanding of a therapeutic compound's mechanism of action (MoA) can provide
great benefits to the drug discovery process. Biological and chemical information eg …

Identification of new therapeutic targets for cystic fibrosis using systems biology and chemogenomics approaches

M Najm - 2023 - pastel.hal.science
Cystic Fibrosis (CF) is the most frequent life-limiting autosomal disease in the Caucasian
population. It is caused by mutations in the gene coding the Cystic Fibrosis Transmembrane …

Malignant and fibroblast programs in aggressive PDAC molecular subtypes

L Veghini - 2023 - tesidottorato.depositolegale.it
Abstract Pancreatic Ductal Adenocarcinoma (PDAC) is the deadliest cancer worldwide. Late
diagnosis and a complex biology make this a difficult-to-treat disease. PDAC displays …

[HTML][HTML] Contextualization of causal regulatory networks from toxicogenomics data applied to drug-induced liver injury

P Trairatphisan, TM de Souza, J Kleinjans, D Jennen… - Toxicology Letters, 2021 - Elsevier
In recent years, network-based methods have become an attractive analytical approach for
toxicogenomics studies. They can capture not only the global changes of regulatory gene …

Network approaches for data-driven reconstruction of intracellular signalling

C Barker - 2023 - repository.cam.ac.uk
Intra-cellular signalling determines how cells process information. Through the integration of
diverse chemical and physical stimuli, cells can enact transcription, among other changes to …

Relationship between stemness and transcriptionally-inferred PI3K activity in human breast cancer

RR Madsen, OM Rueda, X Robin, C Caldas… - bioRxiv, 2020 - biorxiv.org
The development of reliable, prognostically informative molecular tests to direct targeted
cancer therapy is a major challenge. In 2019, the PI3Kα inhibitor alpelisib was approved for …

Generative neural networks separate common and specific transcriptional responses

AJ Lee, DL Mould, J Crawford, D Hu, RK Powers… - bioRxiv, 2021 - biorxiv.org
Genome-wide transcriptome profiling identifies genes that are prone to differential
expression across contexts (“common DEGs”), as well as genes with changes specific to the …

Analysis of the understudied parts of the phospho-signalome using machine learning methods

B Petursson - 2022 - repository.cam.ac.uk
Analysis of the understudied parts of the phospho- signalome using machine learning methods
Page 1 Analysis of the understudied parts of the phosphosignalome using machine learning …

[PDF][PDF] Ontology-led molecular classification of colorectal cancer uncovers distinct tumour subtypes with therapeutic and clinical relevance

S Malla - 2022 - pure.qub.ac.uk
Colorectal cancer (CRC) is a multifaceted and heterogeneous disease. The molecular
profiling of CRC has made it possible to detect tumours with unique biological features …

Functional analysis and modeling of cellular signaling circuits with transcriptomic and proteomic data

M Garrido Rodríguez-Córdoba - 2021 - helvia.uco.es
Biomedical research models try to leverage useful insights for the sake of human health.
Such models emerge from data, and, in recent years, the advent of omics technologies has …