Whole genome resequencing data for three rockfish species of Sebastes

S Xu, L Zhao, S Xiao, T Gao - Scientific Data, 2019 - nature.com
Here we report Illumina-based whole genome sequencing of three rockfish species of
Sebastes in northwest Pacific. The whole genomic DNA was used to prepare 350-bp pair …

Genome-wide population structure and genetic diversity of Japanese whiting (Sillago japonica) inferred from genotyping-by-sequencing (GBS): Implications for …

TY Yang, TX Gao, W Meng, YL Jiang - Fisheries Research, 2020 - Elsevier
Japanese whiting (Sillago japonica) is a relatively common marine fish inhabiting in the
coastal shallow waters and the target species in an important commercial and recreational …

Population genomics provides insights into the population structure and temperature-driven adaptation of Collichthys lucidus

L Zhao, F Qu, N Song, Z Han, T Gao, Z Zhang - BMC genomics, 2021 - Springer
Background Understanding the genetic structure and local adaptive evolutionary
mechanisms of marine organisms is crucial for the management of biological resources. As …

Complex signatures of genomic variation of two non-model marine species in a homogeneous environment

ES Nielsen, R Henriques, RJ Toonen, ISS Knapp… - BMC genomics, 2018 - Springer
Background Genomic tools are increasingly being used on non-model organisms to provide
insights into population structure and variability, including signals of selection. However …

[HTML][HTML] Whole-genome resequencing of Japanese whiting (Sillago japonica) provide insights into local adaptations

ZQ Han, XY Guo, Q Liu, SS Liu, ZX Zhang… - Zoological …, 2021 - ncbi.nlm.nih.gov
The genetic adaptations of various organisms to heterogeneous environments in the
northwestern Pacific remain poorly understood. Heterogeneous genomic divergence among …

Characterization and analysis of transcriptome complexity using SMRT-Seq combined with RNA-Seq for a better understanding of Acanthogobius ommaturus in …

Z Sun, F Lou, X Zhao, N Song - International Journal of Biological …, 2021 - Elsevier
Acanthogobius ommaturus is a eurythermic fish, which is widely distributed in coastal,
estuarine and bay waters of China, Japan and Korea. Due to the lack of whole genomic …

Population genomics reveals possible genetic evidence for parallel evolution of Sebastiscus marmoratus in the northwestern Pacific Ocean

S Xu, T Yanagimoto, N Song, S Cai, T Gao… - Open …, 2019 - royalsocietypublishing.org
Understanding patterns of population diversity and structuring among marine populations is
of great importance for evolutionary biology, and can also directly inform fisheries …

Expanded functionality, increased accuracy, and enhanced speed in the de novo genotyping-by-sequencing pipeline GBS-SNP-CROP

ATO Melo, I Hale - Bioinformatics, 2019 - academic.oup.com
Abstract Summary GBS-SNP-CROP is a bioinformatics pipeline originally developed to
support the cost-effective genome-wide characterization of plant genetic resources through …

Genotyping-by-Sequencing reveals the impact of restocking on wild common carp populations of the Southern Caspian Basin

O Jafari, M Zeinalabedini, D Robledo… - Frontiers in Ecology …, 2022 - frontiersin.org
Understanding the population structure and level of genetic diversity of wild populations is
fundamental for appropriate stock management and species conservation. The common …

Genetic structure of the small yellow croaker (Larimichthys polyactis) across the Yellow Sea and the East China Sea by microsatellite DNA variation: implications for …

J Zheng, Y Yan, Z Li, N Song - PeerJ, 2022 - peerj.com
The small yellow croaker, Larimichthys polyactis, is a commercial fish of the order
Perciformes that mainly inhabit estuaries and coastal waters. In recent years, the resources …