Principles and challenges of genome-wide DNA methylation analysis

PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …

DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database

Y Xiong, Y Wei, Y Gu, S Zhang, J Lyu… - Nucleic acids …, 2017 - academic.oup.com
The human disease methylation database (DiseaseMeth, http://bioinfo. hrbmu. edu.
cn/diseasemeth/) is an interactive database that aims to present the most complete …

EpiFactors: a comprehensive database of human epigenetic factors and complexes

YA Medvedeva, A Lennartsson, R Ehsani… - Database, 2015 - academic.oup.com
Epigenetics refers to stable and long-term alterations of cellular traits that are not caused by
changes in the DNA sequence per se. Rather, covalent modifications of DNA and histones …

iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition

Z Liu, X Xiao, WR Qiu, KC Chou - Analytical biochemistry, 2015 - Elsevier
Predominantly occurring on cytosine, DNA methylation is a process by which cells can
modify their DNAs to change the expression of gene products. It plays very important roles in …

LncRNA regulation: New frontiers in epigenetic solutions to drug chemoresistance

Y Zhou, W Sun, Z Qin, S Guo, Y Kang, S Zeng… - Biochemical …, 2021 - Elsevier
Long-noncoding RNAs (lncRNAs) have been shown to participate in sensitizing or de-
sensitizing cancer cells to chemical drugs during cancer therapeutics. Notably, a plethora of …

PubMeth: a cancer methylation database combining text-mining and expert annotation

M Ongenaert, L Van Neste, T De Meyer… - Nucleic acids …, 2007 - academic.oup.com
Epigenetics, and more specifically DNA methylation is a fast evolving research area. In
almost every cancer type, each month new publications confirm the differentiated regulation …

MethyCancer: the database of human DNA methylation and cancer

X He, S Chang, J Zhang, Q Zhao, H Xiang… - Nucleic acids …, 2007 - academic.oup.com
Cancer is ranked as one of the top killers in all human diseases and continues to have a
devastating effect on the population around the globe. Current research efforts are aiming to …

DNAmod: the DNA modification database

AJ Sood, C Viner, MM Hoffman - Journal of cheminformatics, 2019 - Springer
Covalent DNA modifications, such as 5-methylcytosine (5mC), are increasingly the focus of
numerous research programs. In eukaryotes, both 5mC and 5-hydroxymethylcytosine …

Research progress in predicting DNA methylation modifications and the relation with human diseases

C Ao, L Gao, L Yu - Current Medicinal Chemistry, 2022 - ingentaconnect.com
DNA methylation is an important mode of regulation in epigenetic mechanisms, and it is one
of the research foci in the field of epigenetics. DNA methylation modification affects a series …

Deregulation of glycolysis in cancer: glyceraldehyde-3-phosphate dehydrogenase as a therapeutic target

GS Krasnov, AA Dmitriev, AV Snezhkina… - Expert opinion on …, 2013 - Taylor & Francis
Introduction: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a key glycolytic
enzyme, but recent studies have shown its non-glycolytic role in cell death, survival …