A survey of best practices for RNA-seq data analysis
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
From big data analysis to personalized medicine for all: challenges and opportunities
Recent advances in high-throughput technologies have led to the emergence of systems
biology as a holistic science to achieve more precise modeling of complex diseases. Many …
biology as a holistic science to achieve more precise modeling of complex diseases. Many …
[HTML][HTML] Multi-omics and metabolic modelling pipelines: challenges and tools for systems microbiology
Integrated-omics approaches are quickly spreading across microbiology research labs,
leading to (i) the possibility of detecting previously hidden features of microbial cells like …
leading to (i) the possibility of detecting previously hidden features of microbial cells like …
[HTML][HTML] Statistical single cell multi-omics integration
M Colomé-Tatché, FJ Theis - Current Opinion in Systems Biology, 2018 - Elsevier
Single cell high throughput genomic measurements are revolutionizing the fields of biology
and medicine, providing a means to tackle biological problems that have thus far been …
and medicine, providing a means to tackle biological problems that have thus far been …
Data integration challenges for machine learning in precision medicine
M Martínez-García, E Hernández-Lemus - Frontiers in medicine, 2022 - frontiersin.org
A main goal of Precision Medicine is that of incorporating and integrating the vast corpora on
different databases about the molecular and environmental origins of disease, into analytic …
different databases about the molecular and environmental origins of disease, into analytic …
Multi-omics data integration in extracellular vesicle biology—utopia or future reality?
L Chitoiu, A Dobranici, M Gherghiceanu… - International journal of …, 2020 - mdpi.com
Extracellular vesicles (EVs) are membranous structures derived from the endosomal system
or generated by plasma membrane shedding. Due to their composition of DNA, RNA …
or generated by plasma membrane shedding. Due to their composition of DNA, RNA …
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape
Background Over the last decade network enrichment analysis has become popular in
computational systems biology to elucidate aberrant network modules. Traditionally, these …
computational systems biology to elucidate aberrant network modules. Traditionally, these …
Complexities of JC polyomavirus receptor-dependent and-independent mechanisms of infection
J Morris-Love, WJ Atwood - Viruses, 2022 - mdpi.com
JC polyomavirus (JCPyV) is a small non-enveloped virus that establishes lifelong, persistent
infection in most of the adult population. Immune-competent patients are generally …
infection in most of the adult population. Immune-competent patients are generally …
Integrative omics-from data to biology
H Dihazi, AR Asif, T Beißbarth, R Bohrer… - Expert review of …, 2018 - Taylor & Francis
Introduction: Multi-omic approaches are promising a broader view on cellular processes and
a deeper understanding of biological systems. with strongly improved high-throughput …
a deeper understanding of biological systems. with strongly improved high-throughput …
转录组测序在林草植物抗逆性研究中的应用
高慧娟, 吕昕培, 王润娟, 任伟, 程济南, 汪永平… - 草业 …, 2019 - cyxb.magtech.com.cn
生物和非生物胁迫对农作物产量和生态环境造成极大的威胁, 林草植物对外界环境具有较强的
适应能力, 因此挖掘林草植物抗逆基因, 分析其抗逆机制已经成为当下的研究趋势 …
适应能力, 因此挖掘林草植物抗逆基因, 分析其抗逆机制已经成为当下的研究趋势 …