Enhancer RNAs are an important regulatory layer of the epigenome

V Sartorelli, SM Lauberth - Nature structural & molecular biology, 2020 - nature.com
Noncoding RNAs (ncRNAs) direct a remarkable number of diverse functions in development
and disease through their regulation of transcription, RNA processing and translation …

Linking long noncoding RNA localization and function

LL Chen - Trends in biochemical sciences, 2016 - cell.com
Recent studies have revealed the regulatory potential of many long noncoding RNAs
(lncRNAs). Most lncRNAs, like mRNAs, are transcribed by RNA polymerase II and are …

Enhancers as non-coding RNA transcription units: recent insights and future perspectives

W Li, D Notani, MG Rosenfeld - Nature Reviews Genetics, 2016 - nature.com
Networks of regulatory enhancers dictate distinct cell identities and cellular responses to
diverse signals by instructing precise spatiotemporal patterns of gene expression. However …

[PDF][PDF] Pseudouridylation of tRNA-derived fragments steers translational control in stem cells

N Guzzi, M Cieśla, PCT Ngoc, S Lang, S Arora… - Cell, 2018 - cell.com
Pseudouridylation (Ψ) is the most abundant and widespread type of RNA epigenetic
modification in living organisms; however, the biological role of Ψ remains poorly …

The diversity of long noncoding RNAs and their generation

H Wu, L Yang, LL Chen - Trends in genetics, 2017 - cell.com
Long noncoding RNAs (lncRNAs) are emerging as potential key regulators in gene
expression networks and exhibit a surprising range of shapes and sizes. Several distinct …

Transcription factor trapping by RNA in gene regulatory elements

AA Sigova, BJ Abraham, X Ji, B Molinie, NM Hannett… - Science, 2015 - science.org
Transcription factors (TFs) bind specific sequences in promoter-proximal and-distal DNA
elements to regulate gene transcription. RNA is transcribed from both of these DNA …

The regulation and functions of the nuclear RNA exosome complex

C Kilchert, S Wittmann, L Vasiljeva - Nature Reviews Molecular Cell …, 2016 - nature.com
The RNA exosome complex is the most versatile RNA-degradation machine in eukaryotes.
The exosome has a central role in several aspects of RNA biogenesis, including RNA …

Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

[PDF][PDF] Distinctive patterns of transcription and RNA processing for human lincRNAs

M Schlackow, T Nojima, T Gomes, A Dhir… - Molecular cell, 2017 - cell.com
Numerous long intervening noncoding RNAs (lincRNAs) are generated from the mammalian
genome by RNA polymerase II (Pol II) transcription. Although multiple functions have been …

The life and times of a tRNA

EM Phizicky, AK Hopper - RNA, 2023 - rnajournal.cshlp.org
The study of eukaryotic tRNA processing has given rise to an explosion of new information
and insights in the last several years. We now have unprecedented knowledge of each step …