History, discovery, and classification of lncRNAs

J Jarroux, A Morillon, M Pinskaya - Long non coding RNA biology, 2017 - Springer
Abstract The RNA World Hypothesis suggests that prebiotic life revolved around RNA
instead of DNA and proteins. Although modern cells have changed significantly in 4 billion …

Gene regulation by antisense transcription

V Pelechano, LM Steinmetz - Nature Reviews Genetics, 2013 - nature.com
Antisense transcription, which was initially considered by many as transcriptional noise, is
increasingly being recognized as an important regulator of gene expression. It is …

Genome-wide structure and organization of eukaryotic pre-initiation complexes

HS Rhee, BF Pugh - Nature, 2012 - nature.com
Transcription and regulation of genes originate from transcription pre-initiation complexes
(PICs). Their structural and positional organization across eukaryotic genomes is unknown …

RETRACTED ARTICLE: Upregulation of long noncoding RNA ZEB1-AS1 promotes tumor metastasis and predicts poor prognosis in hepatocellular carcinoma

T Li, J Xie, C Shen, D Cheng, Y Shi, Z Wu, X Deng… - Oncogene, 2016 - nature.com
Hepatocellular carcinoma (HCC) is one of the leading causes of cancer-related mortality
worldwide. Despite progress in diagnostics and treatment of HCC, its prognosis remains …

Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications

A Kapusta, C Feschotte - Trends in Genetics, 2014 - cell.com
Thousands of genes encoding long noncoding RNAs (lncRNAs) have been identified in all
vertebrate genomes thus far examined. The list of lncRNAs partaking in arguably important …

Rapid turnover of long noncoding RNAs and the evolution of gene expression

C Kutter, S Watt, K Stefflova, MD Wilson… - PLoS …, 2012 - journals.plos.org
A large proportion of functional sequence within mammalian genomes falls outside protein-
coding exons and can be transcribed into long RNAs. However, the roles in mammalian …

Long non-coding RNAs: key regulators of epithelial-mesenchymal transition, tumour drug resistance and cancer stem cells

R Heery, SP Finn, S Cuffe, SG Gray - Cancers, 2017 - mdpi.com
Epithelial mesenchymal transition (EMT), the adoption by epithelial cells of a mesenchymal-
like phenotype, is a process co-opted by carcinoma cells in order to initiate invasion and …

The core promoter: At the heart of gene expression

YM Danino, D Even, D Ideses… - Biochimica et Biophysica …, 2015 - Elsevier
The identities of different cells and tissues in multicellular organisms are determined by
tightly controlled transcriptional programs that enable accurate gene expression. The …

[HTML][HTML] Transcriptome surveillance by selective termination of noncoding RNA synthesis

D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler… - Cell, 2013 - cell.com
Pervasive transcription of eukaryotic genomes stems to a large extent from bidirectional
promoters that synthesize mRNA and divergent noncoding RNA (ncRNA). Here, we show …

The landscape of antisense gene expression in human cancers

OA Balbin, R Malik, SM Dhanasekaran… - Genome …, 2015 - genome.cshlp.org
High-throughput RNA sequencing has revealed more pervasive transcription of the human
genome than previously anticipated. However, the extent of natural antisense …