CRISPRi-seq for genome-wide fitness quantification in bacteria

V de Bakker, X Liu, AM Bravo, JW Veening - Nature Protocols, 2022 - nature.com
CRISPR interference (CRISPRi) is a powerful tool to link essential and nonessential genes
to specific phenotypes and to explore their functions. Here we describe a protocol for …

[HTML][HTML] Genome-scale CRISPRi screening: a powerful tool in engineering microbiology

L Sun, P Zheng, J Sun, VF Wendisch, Y Wang - Engineering Microbiology, 2023 - Elsevier
Deciphering gene function is fundamental to engineering of microbiology. The clustered
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …

A genome‐scale yeast library with inducible expression of individual genes

Y Arita, G Kim, Z Li, H Friesen, G Turco… - Molecular Systems …, 2021 - embopress.org
The ability to switch a gene from off to on and monitor dynamic changes provides a powerful
approach for probing gene function and elucidating causal regulatory relationships. Here …

Design of four small-molecule-inducible systems in the yeast chromosome, applied to optimize terpene biosynthesis

JH Park, MC Bassalo, GM Lin, Y Chen… - ACS synthetic …, 2023 - ACS Publications
The optimization of cellular functions often requires the balancing of gene expression, but
the physical construction and screening of alternative designs are costly and time …

Progress in Gene Editing and Metabolic Regulation of Saccharomyces cerevisiae with CRISPR/Cas9 Tools

Y Liang, S Gao, X Qi, LN Valentovich… - ACS Synthetic …, 2024 - ACS Publications
The CRISPR/Cas9 systems have been developed as tools for genetic engineering and
metabolic engineering in various organisms. In this review, various aspects of CRISPR/Cas9 …

Development and applications of a CRISPR activation system for facile genetic overexpression in Candida albicans

NC Gervais, AA La Bella, LF Wensing, J Sharma… - G3, 2023 - academic.oup.com
For the fungal pathogen Candida albicans, genetic overexpression readily occurs via a
diversity of genomic alterations, such as aneuploidy and gain-of-function mutations, with …

[HTML][HTML] A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast

NJ McGlincy, ZA Meacham, KK Reynaud, R Muller… - BMC genomics, 2021 - Springer
Background CRISPR/Cas9-mediated transcriptional interference (CRISPRi) enables
programmable gene knock-down, yielding loss-of-function phenotypes for nearly any gene …

[HTML][HTML] From Saccharomyces cerevisiae to Ethanol: Unlocking the Power of Evolutionary Engineering in Metabolic Engineering Applications

A Topaloğlu, Ö Esen, B Turanlı-Yıldız, M Arslan… - Journal of Fungi, 2023 - mdpi.com
Increased human population and the rapid decline of fossil fuels resulted in a global
tendency to look for alternative fuel sources. Environmental concerns about fossil fuel …

Yca1 metacaspase: diverse functions determine how yeast live and let die

DK Lam, G Sherlock - FEMS Yeast Research, 2023 - academic.oup.com
The Yca1 metacaspase was discovered due to its role in the regulation of apoptosis in
Saccharomyces cerevisiae. However, the mechanisms that drive apoptosis in yeast remain …

A CRISPR interference screen of essential genes reveals that proteasome regulation dictates acetic acid tolerance in Saccharomyces cerevisiae

V Mukherjee, U Lind, RP St. Onge, A Blomberg… - Msystems, 2021 - Am Soc Microbiol
ABSTRACT CRISPR interference (CRISPRi) is a powerful tool to study cellular physiology
under different growth conditions, and this technology provides a means for screening …