[HTML][HTML] Toward kingdom-wide analyses of gene expression

I Julca, QW Tan, M Mutwil - Trends in Plant Science, 2023 - cell.com
Gene expression data for Archaeplastida are accumulating exponentially, with more than
300 000 RNA-sequencing (RNA-seq) experiments available for hundreds of species. The …

Dormancy-Associated MADS-Box (DAM) and the Abscisic Acid Pathway Regulate Pear Endodormancy Through a Feedback Mechanism

PA Tuan, S Bai, T Saito, A Ito… - Plant and Cell …, 2017 - academic.oup.com
Abstract In the pear 'Kosui'(Pyrus pyrifolia Nakai), the dormancy-associated MADS-box
(PpDAM1= PpMADS13-1) gene has been reported to play an essential role in bud …

[HTML][HTML] Selection and Validation of Appropriate Reference Genes for Quantitative Real-Time PCR Analysis of Gene Expression in Lycoris aurea

R Ma, S Xu, Y Zhao, B Xia, R Wang - Frontiers in plant science, 2016 - frontiersin.org
Lycoris aurea (L'Hér.) Herb, a perennial grass species, produces a unique variety of
pharmacologically active Amaryllidaceae alkaloids. However, the key enzymes and their …

[HTML][HTML] Reference gene selection for normalization of RT-qPCR gene expression data from Actinidia deliciosa leaves infected with Pseudomonas syringae pv …

M Petriccione, F Mastrobuoni, L Zampella… - Scientific reports, 2015 - nature.com
Normalization of data, by choosing the appropriate reference genes (RGs), is fundamental
for obtaining reliable results in reverse transcription-quantitative PCR (RT-qPCR). In this …

Histone modification and signalling cascade of the dormancy‐associatedMADS‐box gene, PpMADS13‐1, in Japanese pear (Pyrus pyrifolia) during …

T Saito, S Bai, T Imai, A Ito, I Nakajima… - Plant, cell & …, 2015 - Wiley Online Library
D ormancy‐associated MADS‐box (DAM) genes play an important role in endodormancy
phase transition. We investigated histone modification in the DAM homolog (PpMADS 13‐1) …

Development of reference genes for horticultural plants

U Ahmed, Q Xie, X Shi, B Zheng - Critical Reviews in Plant …, 2022 - Taylor & Francis
Quantitative reverse transcription polymerase chain reaction (qRT-PCR) is extensively
applied technique to investigate the transcript abundance of target genes in various …

[HTML][HTML] Systematic selection and validation of suitable reference genes for quantitative real-time PCR normalization studies of gene expression in Nitraria tangutorum

B Wang, H Duan, P Chong, S Su, L Shan, D Yi… - Scientific Reports, 2020 - nature.com
Suitable reference genes can be used to calibrate the error in quantitative real-time PCR
(qPCR) experiments, making the results more credible. However, there are no reference …

[HTML][HTML] Using RNA-seq data to select reference genes for normalizing gene expression in apple roots

Z Zhou, P Cong, Y Tian, Y Zhu - PloS one, 2017 - journals.plos.org
Gene expression in apple roots in response to various stress conditions is a less-explored
research subject. Reliable reference genes for normalizing quantitative gene expression …

[HTML][HTML] Evaluation and Validation of Housekeeping Genes as Reference for Gene Expression Studies in Pigeonpea (Cajanus cajan) Under Drought Stress …

P Sinha, VK Singh, V Suryanarayana, L Krishnamurthy… - PloS one, 2015 - journals.plos.org
Gene expression analysis using quantitative real-time PCR (qRT-PCR) is a very sensitive
technique and its sensitivity depends on the stable performance of reference gene (s) used …

Epigenetic regulation of MdMYB1 is associated with paper bagging-induced red pigmentation of apples

S Bai, PA Tuan, T Saito, C Honda, Y Hatsuyama, A Ito… - Planta, 2016 - Springer
Main conclusion Paper-bagging treatment can transform non-transcribed MdMYB1-2 and
MdMYB1-3 alleles into transcribed alleles through epigenetic regulations, resulting in the …