Bayesian total-evidence dating revisits sloth phylogeny and biogeography: a cautionary tale on morphological clock analyses

JV Tejada, PO Antoine, P Münch, G Billet… - Systematic …, 2024 - academic.oup.com
Combining morphological and molecular characters through Bayesian total-evidence dating
allows inferring the phylogenetic and timescale framework of both extant and fossil taxa …

[HTML][HTML] Synergistic innovations enabled the radiation of anglerfishes in the deep open ocean

CD Brownstein, KL Zapfe, S Lott, RC Harrington… - Current Biology, 2024 - cell.com
Major ecological transitions are thought to fuel diversification, but whether they are
contingent on the evolution of certain traits called key innovations 1 is unclear. Key …

Phylogenetic analysis of fossil flowers using an angiosperm‐wide data set: proof‐of‐concept and challenges ahead

J Schoenenberger, M von Balthazar… - American Journal of …, 2020 - Wiley Online Library
Premise Significant paleobotanical discoveries in recent decades have considerably
improved our understanding of the early evolution of angiosperms and their flowers …

A new Pleistocene Ctenomys and divergence dating of the hyperdiverse South American rodent family Ctenomyidae

NAD Santi, DH Verzi, AI Olivares, P Piñero… - Journal of Systematic …, 2021 - Taylor & Francis
The South American Ctenomys is the most speciose genus among both hystricomorphs and
subterranean rodents of the world. Here, we present the most exhaustive phylogenies and …

[HTML][HTML] LinguaPhylo: a probabilistic model specification language for reproducible phylogenetic analyses

AJ Drummond, K Chen, FK Mendes… - PLOS Computational …, 2023 - journals.plos.org
Phylogenetic models have become increasingly complex, and phylogenetic data sets have
expanded in both size and richness. However, current inference tools lack a model …

Estimating epidemic incidence and prevalence from genomic data

TG Vaughan, GE Leventhal… - Molecular biology …, 2019 - academic.oup.com
Modern phylodynamic methods interpret an inferred phylogenetic tree as a partial
transmission chain providing information about the dynamic process of transmission and …

The role of paleontological data in bryophyte systematics

AC Bippus, JR Flores, J Hyvönen… - Journal of …, 2022 - academic.oup.com
Systematics reconstructs tempo and mode in biological evolution by resolving the
phylogenetic fabric of biodiversity. The staggering duration and complexity of evolution …

Phylogeny, ancestors, and anagenesis in the hominin fossil record

C Parins-Fukuchi, E Greiner, LM MacLatchy… - Paleobiology, 2019 - cambridge.org
Probabilistic approaches to phylogenetic inference have recently gained traction in
paleontological studies. Because they directly model processes of evolutionary change …

A systematist's guide to estimating Bayesian phylogenies from morphological data

AM Wright - Insect Systematics and Diversity, 2019 - academic.oup.com
Phylogenetic trees are crucial to many aspects of taxonomic and comparative biology. Many
researchers have adopted Bayesian methods to estimate their phylogenetic trees. In this …

Why should we compare morphological and molecular disparity?

C Van Den Ende, MN Puttick… - Methods in Ecology …, 2023 - Wiley Online Library
Indices of morphological disparity seek to summarise the highly multivariate morphological
variation across groups of species within clades, time bins or other groups. Morphological …