[HTML][HTML] Recent progress and opportunities for nucleic acid aptamers

J Byun - Life, 2021 - mdpi.com
Coined three decades ago, the term aptamer and directed evolution have now reached their
maturity. The concept that nucleic acid could modulate the activity of target protein as ligand …

Recent advances in toxicity prediction: applications of deep graph learning

Y Miao, H Ma, J Huang - Chemical Research in Toxicology, 2023 - ACS Publications
The development of new drugs is time-consuming and expensive, and as such, accurately
predicting the potential toxicity of a drug candidate is crucial in ensuring its safety and …

G4LDB 2.2: a database for discovering and studying G-quadruplex and i-Motif ligands

YH Wang, QF Yang, X Lin, D Chen… - Nucleic Acids …, 2022 - academic.oup.com
Noncanonical nucleic acid structures, such as G-quadruplex (G4) and i-Motif (iM), have
attracted increasing research interests because of their unique structural and binding …

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

M Magnus, M Antczak, T Zok, J Wiedemann… - Nucleic acids …, 2020 - academic.oup.com
Significant improvements have been made in the efficiency and accuracy of RNA 3D
structure prediction methods during the succeeding challenges of RNA-Puzzles, a …

Tunable fluorescein-encapsulated zeolitic imidazolate framework-8 nanoparticles for solid-state lighting

T Xiong, Y Zhang, L Donà, M Gutiérrez… - ACS Applied Nano …, 2021 - ACS Publications
A series of fluorescein-encapsulated zeolitic imidazolate framework-8 (fluorescein@ ZIF-8)
luminescent nanoparticles with a scalable guest loading has been fabricated and …

Highly porous, flexible and robust cellulose acetate/Au/ZnO as a hybrid photocatalyst

SNK Abad, M Mozammel, J Moghaddam… - Applied Surface …, 2020 - Elsevier
In this research, we aimed to study the photocatalytic behavior of metal-polymer
nanocomposite materials. Au/ZnO nanoparticles were synthesized via co-precipitation and …

DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL

XJ Lu - Nucleic acids research, 2020 - academic.oup.com
Sophisticated analysis and simplified visualization are crucial for understanding complicated
structures of biomacromolecules. DSSR (Dissecting the Spatial Structure of RNA) is an …

[HTML][HTML] Optimization of a deep-learning method based on the classification of images generated by parameterized deep snap a novel molecular-image-input …

Y Matsuzaka, Y Uesawa - Frontiers in bioengineering and …, 2019 - frontiersin.org
Numerous chemical compounds are distributed around the world and may affect the
homeostasis of the endocrine system by disrupting the normal functions of hormone …

[HTML][HTML] Structural flexibility of DNA-RNA hybrid duplex: stretching and twist-stretch coupling

JH Liu, K Xi, X Zhang, L Bao, X Zhang, ZJ Tan - Biophysical journal, 2019 - cell.com
Abstract DNA-RNA hybrid (DRH) duplexes play essential roles during the replication of DNA
and the reverse transcription of RNA viruses, and their flexibility is important for their …

[HTML][HTML] Prediction model with high-performance constitutive androstane receptor (car) using deepsnap-deep learning approach from the Tox21 10K compound library

Y Matsuzaka, Y Uesawa - International journal of molecular sciences, 2019 - mdpi.com
The constitutive androstane receptor (CAR) plays pivotal roles in drug-induced liver injury
through the transcriptional regulation of drug-metabolizing enzymes and transporters. Thus …