[PDF][PDF] Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay
A Vuillemin, Z Kerrigan, S D'Hondt… - FEMS Microbiology …, 2020 - academic.oup.com
Chloroflexi are widespread in subsurface environments, and recent studies indicate that
they represent a major fraction of the communities in subseafloor sediment. Here, we …
they represent a major fraction of the communities in subseafloor sediment. Here, we …
Comparative single-cell genomics of Chloroflexi from the Okinawa Trough deep-subsurface biosphere
H Fullerton, CL Moyer - Applied and environmental microbiology, 2016 - Am Soc Microbiol
Chloroflexi small-subunit (SSU) rRNA gene sequences are frequently recovered from
subseafloor environments, but the metabolic potential of the phylum is poorly understood …
subseafloor environments, but the metabolic potential of the phylum is poorly understood …
Sustained detoxification of 1, 2-dichloroethane to ethylene by a symbiotic consortium containing Dehalococcoides species
Z Wu, X Yu, G Liu, W Li, L Lu, P Li, X Xu, J Jiang… - Environmental …, 2023 - Elsevier
Dichloroethane (1, 2-DCA) is a ubiquitous volatile halogenated organic pollutant in
groundwater and soil, which poses a serious threat to the ecosystem and human health …
groundwater and soil, which poses a serious threat to the ecosystem and human health …
Parallel labeling experiments for pathway elucidation and 13C metabolic flux analysis
MR Antoniewicz - Current Opinion in Biotechnology, 2015 - Elsevier
Highlights•Parallel labeling experiments with multiple tracers improve resolution of pathway
fluxes.•13 C-metabolic flux analysis is increasingly applied to non-model organisms.• …
fluxes.•13 C-metabolic flux analysis is increasingly applied to non-model organisms.• …
Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol
S Atashgahi, Y Lu, Y Zheng, E Saccenti… - Environmental …, 2017 - Wiley Online Library
Biostimulation is widely used to enhance reductive dechlorination of chlorinated ethenes in
contaminated aquifers. However, the knowledge on corresponding biogeochemical …
contaminated aquifers. However, the knowledge on corresponding biogeochemical …
An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research
D Türkowsky, N Jehmlich, G Diekert… - FEMS microbiology …, 2018 - academic.oup.com
Organohalide respiration (OHR) is a crucial process in the global halogen cycle and of
interest for bioremediation. However, investigations on OHR are hampered by the restricted …
interest for bioremediation. However, investigations on OHR are hampered by the restricted …
Identification and characterization of major bile acid 7α-dehydroxylating bacteria in the human gut
The metabolism of bile acids (BAs) by gut bacteria plays an important role in human health.
This study identified and characterized 7α-dehydroxylating bacteria, which are majorly …
This study identified and characterized 7α-dehydroxylating bacteria, which are majorly …
Continuous cultivation of Dehalococcoides mccartyi with brominated tyrosine avoids toxic byproducts and gives tight reactor control
Dehalococcoides mccartyi strain CBDB1 is a strictly anaerobic organohalide-respiring
bacterium with strong application potential to remediate aquifers and soils contaminated …
bacterium with strong application potential to remediate aquifers and soils contaminated …
Quantitative analysis of glycine related metabolic pathways for one-carbon synthetic biology
Glycine is an essential one-carbon (C1) metabolite nested in a complex network of cellular
metabolism. Glycine and its related metabolic pathways have important biochemical and …
metabolism. Glycine and its related metabolic pathways have important biochemical and …
Efficient metabolic exchange and electron transfer within a syntrophic trichloroethene-degrading coculture of Dehalococcoides mccartyi 195 and Syntrophomonas …
ABSTRACT Dehalococcoides mccartyi 195 (strain 195) and Syntrophomonas wolfei were
grown in a sustainable syntrophic coculture using butyrate as an electron donor and carbon …
grown in a sustainable syntrophic coculture using butyrate as an electron donor and carbon …