Minimal frustration underlies the usefulness of incomplete regulatory network models in biology

S Tripathi, DA Kessler, H Levine - Proceedings of the …, 2023 - National Acad Sciences
Regulatory networks as large and complex as those implicated in cell-fate choice are
expected to exhibit intricate, very high-dimensional dynamics. Cell-fate choice, however, is a …

[HTML][HTML] Parameter uncertainty in biochemical models described by ordinary differential equations

J Vanlier, CA Tiemann, PAJ Hilbers… - Mathematical …, 2013 - Elsevier
Improved mechanistic understanding of biochemical networks is one of the driving ambitions
of Systems Biology. Computational modeling allows the integration of various sources of …

[图书][B] Explaining cancer: Finding order in disorder

A Plutynski - 2018 - books.google.com
In Explaining Cancer, Anya Plutynski addresses a variety of philosophical questions that
arise in the context of cancer science and medicine. She begins with the following …

Parameter estimation and optimal experimental design

JR Banga, E Balsa-Canto - Essays in biochemistry, 2008 - portlandpress.com
Mathematical models are central in systems biology and provide new ways to understand
the function of biological systems, helping in the generation of novel and testable …

Systems medicine and metabolic modelling

A Mardinoglu, J Nielsen - Journal of internal medicine, 2012 - Wiley Online Library
Mardinoglu A, Nielsen J (University of Technology, Gothenburg, Sweden). Systems
medicine and metabolic modelling (Key Symposium). J Intern Med 2012; 271: 142–154 …

[HTML][HTML] Trends in the application of “omics” to ecotoxicology and stress ecology

JN Ebner - Genes, 2021 - mdpi.com
Our ability to predict and assess how environmental changes such as pollution and climate
change affect components of the Earth's biome is of paramount importance. This need …

[HTML][HTML] Towards AI-driven longevity research: an overview

N Marino, G Putignano, S Cappilli, E Chersoni… - Frontiers in …, 2023 - frontiersin.org
While in the past technology has mostly been utilized to store information about the
structural configuration of proteins and molecules for research and medical purposes …

[HTML][HTML] The proteome of schizophrenia

JM Nascimento, D Martins-de-Souza - npj Schizophrenia, 2015 - nature.com
On observing schizophrenia from a clinical point of view up to its molecular basis, one may
conclude that this is likely to be one of the most complex human disorders to be …

Compartmentation prevents a lethal turbo-explosion of glycolysis in trypanosomes

JR Haanstra, A van Tuijl, P Kessler… - Proceedings of the …, 2008 - National Acad Sciences
ATP generation by both glycolysis and glycerol catabolism is autocatalytic, because the first
kinases of these pathways are fuelled by ATP produced downstream. Previous modeling …

Comprehensive two-dimensional gas chromatography in metabolomics

MF Almstetter, PJ Oefner, K Dettmer - Analytical and bioanalytical …, 2012 - Springer
One of the major objectives in metabolomics is the identification of subtle changes in
metabolite profiles as affected by genetic or environmental factors. Comprehensive two …