[HTML][HTML] Computational single cell oncology: state of the art

E Paas-Oliveros, E Hernández-Lemus… - Frontiers in …, 2023 - frontiersin.org
Single cell computational analysis has emerged as a powerful tool in the field of oncology,
enabling researchers to decipher the complex cellular heterogeneity that characterizes …

Multiscale engineering of brain organoids for disease modeling

C Xu, A Alameri, W Leong, E Johnson, Z Chen… - Advanced Drug Delivery …, 2024 - Elsevier
Brain organoids hold great potential for modeling human brain development and
pathogenesis. They recapitulate certain aspects of the transcriptional trajectory, cellular …

[HTML][HTML] A comparison of marker gene selection methods for single-cell RNA sequencing data

JM Pullin, DJ McCarthy - Genome Biology, 2024 - Springer
Background The development of single-cell RNA sequencing (scRNA-seq) has enabled
scientists to catalog and probe the transcriptional heterogeneity of individual cells in …

Deciphering cell types by integrating scATAC-seq data with genome sequences

Y Zeng, M Luo, N Shangguan, P Shi, J Feng… - Nature Computational …, 2024 - nature.com
The single-cell assay for transposase-accessible chromatin using sequencing (scATAC-seq)
technology provides insight into gene regulation and epigenetic heterogeneity at single-cell …

[HTML][HTML] Generation of human cerebral organoids with a structured outer subventricular zone

RM Walsh, R Luongo, E Giacomelli, G Ciceri… - Cell Reports, 2024 - cell.com
Outer radial glia (oRG) emerge as cortical progenitor cells that support the development of
an enlarged outer subventricular zone (oSVZ) and the expansion of the neocortex. The in …

[HTML][HTML] Single-cell assignment using multiple-adversarial domain adaptation network with large-scale references

P Ren, X Shi, Z Yu, X Dong, X Ding, J Wang, L Sun… - Cell Reports …, 2023 - cell.com
The rapid accumulation of single-cell RNA-seq data has provided rich resources to
characterize various human cell populations. However, achieving accurate cell-type …

Single-cell RNA sequencing of human tissue supports successful drug targets.

E Dann, E Teeple, R Elmentaite, KB Meyer, G Gaglia… - MedRxiv, 2024 - medrxiv.org
Early characterization of drug targets associated with disease can greatly reduce clinical
failures attributed to lack of safety or efficacy. As single-cell RNA sequencing (scRNA-seq) of …

[HTML][HTML] Publication, funding, and experimental data in support of Human Reference Atlas construction and usage

Y Kong, K Börner - Scientific Data, 2024 - nature.com
Experts from 18 consortia are collaborating on the Human Reference Atlas (HRA) which
aims to map the 37 trillion cells in the healthy human body. Information relevant for HRA …

[HTML][HTML] Decoding the transcriptional heterogeneity, differentiation lineage, clinical significance in tissue-resident memory CD8 T cell of the small intestine by single …

J Fang, J Lei, B He, Y Wu, P Chen, Z Sun, N Wu… - Journal of Translational …, 2024 - Springer
Resident memory T (Trm) cells which are specifically located in non-lymphoid tissues
showed distinct phenotypes and functions compared to circulating memory T cells and were …

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

K Börner, PD Blood, JC Silverstein, M Ruffalo… - bioRxiv, 2024 - biorxiv.org
Abstract The Human BioMolecular Atlas Program (HuBMAP) aims to construct a reference
3D structural, cellular, and molecular atlas of the healthy adult human body. The HuBMAP …