Application of association mapping to understanding the genetic diversity of plant germplasm resources

IY Abdurakhmonov… - International journal of …, 2008 - Wiley Online Library
Compared to the conventional linkage mapping, linkage disequilibrium (LD)‐mapping,
using the nonrandom associations of loci in haplotypes, is a powerful high‐resolution …

Population genetics of genomics-based crop improvement methods

MT Hamblin, ES Buckler, JL Jannink - Trends in Genetics, 2011 - cell.com
Many genome-wide association studies (GWAS) in humans are concluding that, even with
very large sample sizes and high marker densities, most of the genetic basis of complex …

[HTML][HTML] Genome-wide association studies for agronomical traits in a world wide spring barley collection

RK Pasam, R Sharma, M Malosetti, FA van Eeuwijk… - BMC plant biology, 2012 - Springer
Background Genome-wide association studies (GWAS) based on linkage disequilibrium
(LD) provide a promising tool for the detection and fine mapping of quantitative trait loci …

Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.)

K Neumann, B Kobiljski, S Denčić, RK Varshney… - Molecular …, 2011 - Springer
Association-based trait mapping is an innovative methodology based on linkage
disequilibrium. Studies in plants, especially in cereals, are rare. A genome-wide association …

[HTML][HTML] Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae)

M Kwak, P Gepts - Theoretical and Applied Genetics, 2009 - Springer
Domesticated materials with well-known wild relatives provide an experimental system to
reveal how human selection during cultivation affects genetic composition and adaptation to …

A high density barley microsatellite consensus map with 775 SSR loci

RK Varshney, TC Marcel, L Ramsay, J Russell… - theoretical and Applied …, 2007 - Springer
A microsatellite or simple sequence repeat (SSR) consensus map of barley was constructed
by joining six independent genetic maps based on the mapping populations 'Igri× …

[HTML][HTML] Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm

IY Abdurakhmonov, RJ Kohel, JZ Yu, AE Pepper… - Genomics, 2008 - Elsevier
The narrow genetic base of cultivated cotton germplasm is hindering the cotton productivity
worldwide. Although potential genetic diversity exists in Gossypium genus, it is largely …

Genetic diversity, seed size associations and population structure of a core collection of common beans (Phaseolus vulgaris L.)

MW Blair, LM Díaz, HF Buendía, MC Duque - Theoretical and Applied …, 2009 - Springer
Cultivated common bean germplasm is especially diverse due to the parallel domestication
of two genepools in the Mesoamerican and Andean centers of diversity and introgression …

[HTML][HTML] Genetic Diversity and Linkage Disequilibrium in Chinese Bread Wheat (Triticum aestivum L.) Revealed by SSR Markers

C Hao, L Wang, H Ge, Y Dong, X Zhang - PLOS one, 2011 - journals.plos.org
Two hundred and fifty bread wheat lines, mainly Chinese mini core accessions, were
assayed for polymorphism and linkage disequilibrium (LD) based on 512 whole-genome …

Association mapping of salt tolerance in barley (Hordeum vulgare L.)

NV Long, O Dolstra, M Malosetti, B Kilian… - Theoretical and applied …, 2013 - Springer
A spring barley collection of 192 genotypes from a wide geographical range was used to
identify quantitative trait loci (QTLs) for salt tolerance traits by means of an association …