Effective population size and patterns of molecular evolution and variation

B Charlesworth - Nature Reviews Genetics, 2009 - nature.com
The effective size of a population, N e, determines the rate of change in the composition of a
population caused by genetic drift, which is the random sampling of genetic variants in a …

Evolution of transcription factor binding in metazoans—mechanisms and functional implications

D Villar, P Flicek, DT Odom - Nature Reviews Genetics, 2014 - nature.com
Differences in transcription factor binding can contribute to organismal evolution by altering
downstream gene expression programmes. Genome-wide studies in Drosophila …

Analysis of one million base pairs of Neanderthal DNA

RE Green, J Krause, SE Ptak, AW Briggs, MT Ronan… - Nature, 2006 - nature.com
Neanderthals are the extinct hominid group most closely related to contemporary humans,
so their genome offers a unique opportunity to identify genetic changes specific to …

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Genome sequence of red jungle fowl: Washington … - Nature, 2004 - nature.com
We describe a genetic variation map for the chicken genome containing 2.8 million single-
nucleotide polymorphisms (SNPs). This map is based on a comparison of the sequences of …

Adaptive evolution: evaluating empirical support for theoretical predictions

CF Olson-Manning, MR Wagner… - Nature Reviews …, 2012 - nature.com
Adaptive evolution is shaped by the interaction of population genetics, natural selection and
underlying network and biochemical constraints. Variation created by mutation, the raw …

A new approach to estimate parameters of speciation models with application to apes

C Becquet, M Przeworski - Genome research, 2007 - genome.cshlp.org
How populations diverge and give rise to distinct species remains a fundamental question in
evolutionary biology, with important implications for a wide range of fields, from conservation …

Ancestry and disease in the age of genomic medicine

CN Rotimi, LB Jorde - New England Journal of Medicine, 2010 - Mass Medical Soc
Ancestry and Disease in the Age of Genomic Medicine | New England Journal of Medicine Skip
to main content The New England Journal of Medicine homepage Advanced Search SEARCH …

Adaptation and constraint at Toll-like receptors in primates

G Wlasiuk, MW Nachman - Molecular biology and evolution, 2010 - academic.oup.com
Frequent positive selection is a hallmark of genes involved in the adaptive immune system
of vertebrates, but the incidence of positive selection for genes underlying innate immunity in …

Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa

EJ Gilchrist, GW Haughn, CC Ying, SP Otto… - Molecular …, 2006 - Wiley Online Library
Ecotilling was used as a simple nucleotide polymorphism (SNP) discovery tool to examine
DNA variation in natural populations of the western black cottonwood, Populus trichocarpa …

Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs

BP McEvoy, JE Powell, ME Goddard… - Genome …, 2011 - genome.cshlp.org
Genetic and fossil evidence supports a single, recent (< 200,000 yr) origin of modern Homo
sapiens in Africa, followed by later population divergence and dispersal across the globe …