Origins of specificity in protein-DNA recognition
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …
processes. In this review, we provide a revised view of protein-DNA interactions that …
IHF and HU: flexible architects of bent DNA
KK Swinger, PA Rice - Current opinion in structural biology, 2004 - Elsevier
The energetic cost of bending short segments of DNA is very high. This bending is critical for
the packaging of DNA and is exploited to regulate many cellular processes. In prokaryotes …
the packaging of DNA and is exploited to regulate many cellular processes. In prokaryotes …
[图书][B] Nucleic acids in chemistry and biology
GM Blackburn - 2006 - books.google.com
The structure, function and reactions of nucleic acids are central to molecular biology and
are crucial for the understanding of complex biological processes involved. Revised and …
are crucial for the understanding of complex biological processes involved. Revised and …
The role of water in protein-DNA recognition
▪ Abstract Is it by design or by default that water molecules are observed at the interfaces of
some protein-DNA complexes? Both experimental and theoretical studies on the …
some protein-DNA complexes? Both experimental and theoretical studies on the …
[HTML][HTML] Making the bend: DNA tertiary structure and protein-DNA interactions
S Harteis, S Schneider - International journal of molecular sciences, 2014 - mdpi.com
DNA structure functions as an overlapping code to the DNA sequence. Rapid progress in
understanding the role of DNA structure in gene regulation, DNA damage recognition and …
understanding the role of DNA structure in gene regulation, DNA damage recognition and …
The Terminally Redundant, Nonpermuted Genome of Listeria Bacteriophage A511: a Model for the SPO1-Like Myoviruses of Gram-Positive Bacteria
J Klumpp, J Dorscht, R Lurz, R Bielmann… - Journal of …, 2008 - Am Soc Microbiol
Only little information on a particular class of myoviruses, the SPO1-like bacteriophages
infecting low-G+ C-content, gram-positive host bacteria (Firmicutes), is available. We present …
infecting low-G+ C-content, gram-positive host bacteria (Firmicutes), is available. We present …
The λ integrase site‐specific recombination pathway
A Landy - Mobile DNA III, 2015 - Wiley Online Library
The λ site‐specific recombination pathway has enjoyed the sequential attentions of
geneticists, biochemists, and structural biologists for more than 50 years. It has proven to be …
geneticists, biochemists, and structural biologists for more than 50 years. It has proven to be …
DNA structural features of eukaryotic TATA‐containing and TATA‐less promoters
VR Yella, M Bansal - FEBS Open Bio, 2017 - Wiley Online Library
Eukaryotic genes can be broadly classified as TATA‐containing and TATA‐less based on
the presence of TATA box in their promoters. Experiments on both classes of genes have …
the presence of TATA box in their promoters. Experiments on both classes of genes have …
Control of DNA minor groove width and Fis protein binding by the purine 2-amino group
The width of the DNA minor groove varies with sequence and can be a major determinant of
DNA shape recognition by proteins. For example, the minor groove within the center of the …
DNA shape recognition by proteins. For example, the minor groove within the center of the …
Structure-based analysis of HU–DNA binding
KK Swinger, PA Rice - Journal of molecular biology, 2007 - Elsevier
HU and IHF are prokaryotic proteins that induce very large bends in DNA. They are present
in high concentrations in the bacterial nucleoid and aid in chromosomal compaction. They …
in high concentrations in the bacterial nucleoid and aid in chromosomal compaction. They …