Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes

R Micura, C Höbartner - Chemical Society Reviews, 2020 - pubs.rsc.org
This review aims at juxtaposing common versus distinct structural and functional strategies
that are applied by aptamers, riboswitches, and ribozymes/DNAzymes. Focusing on recently …

Hybrids of RNA viruses and viroid-like elements replicate in fungi

M Forgia, B Navarro, S Daghino, A Cervera… - Nature …, 2023 - nature.com
Earth's life may have originated as self-replicating RNA, and it has been argued that RNA
viruses and viroid-like elements are remnants of such pre-cellular RNA world. RNA viruses …

Viruses defined by the position of the virosphere within the replicator space

EV Koonin, VV Dolja, M Krupovic… - … and Molecular Biology …, 2021 - Am Soc Microbiol
Originally, viruses were defined as miniscule infectious agents that passed through filters
that retain even the smallest cells. Subsequently, viruses were considered obligate …

Catalytic DNA: scope, applications, and biochemistry of deoxyribozymes

SK Silverman - Trends in biochemical sciences, 2016 - cell.com
The discovery of natural RNA enzymes (ribozymes) prompted the pursuit of artificial DNA
enzymes (deoxyribozymes) by in vitro selection methods. A key motivation is the conceptual …

Riboswitches and translation control

RR Breaker - Cold Spring Harbor perspectives in biology, 2018 - cshperspectives.cshlp.org
A growing collection of bacterial riboswitch classes is being discovered that sense central
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …

Catalytic nucleic acids: biochemistry, chemical biology, biosensors, and nanotechnology

L Ma, J Liu - Iscience, 2020 - cell.com
Since the initial discovery of ribozymes in the early 1980s, catalytic nucleic acids have been
used in different areas. Compared with protein enzymes, catalytic nucleic acids are …

Biosensors based on functional nucleic acids and isothermal amplification techniques

X Cao, C Chen, Q Zhu - Talanta, 2023 - Elsevier
In the past few years, with the in-depth research of functional nucleic acids and isothermal
amplification techniques, their applications in the field of biosensing have attracted great …

Advances in riboswitch‐based biosensor as food samples detection tool

X Dong, S Qi, IM Khan, Y Sun… - … Reviews in Food …, 2023 - Wiley Online Library
Food safety has always been a hot issue of social concern, and biosensing has been widely
used in the field of food safety detection. Compared with traditional aptamer‐based …

Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions

Z Weinberg, CE Lünse, KA Corbino… - Nucleic acids …, 2017 - academic.oup.com
The discovery of structured non-coding RNAs (ncRNAs) in bacteria can reveal new facets of
biology and biochemistry. Comparative genomics analyses executed by powerful computer …