Roles and mechanisms of alternative splicing in cancer—implications for care
SC Bonnal, I López-Oreja, J Valcárcel - Nature reviews Clinical …, 2020 - nature.com
Removal of introns from messenger RNA precursors (pre-mRNA splicing) is an essential
step for the expression of most eukaryotic genes. Alternative splicing enables the regulated …
step for the expression of most eukaryotic genes. Alternative splicing enables the regulated …
Alternative mRNA splicing in cancer immunotherapy
L Frankiw, D Baltimore, G Li - Nature Reviews Immunology, 2019 - nature.com
Immunotherapies are yielding effective treatments for several previously untreatable
cancers. Still, the identification of suitable antigens specific to the tumour that can be targets …
cancers. Still, the identification of suitable antigens specific to the tumour that can be targets …
Decoding disease: from genomes to networks to phenotypes
AK Wong, RSG Sealfon, CL Theesfeld… - Nature Reviews …, 2021 - nature.com
Interpreting the effects of genetic variants is key to understanding individual susceptibility to
disease and designing personalized therapeutic approaches. Modern experimental …
disease and designing personalized therapeutic approaches. Modern experimental …
A review of deep learning applications in human genomics using next-generation sequencing data
WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …
data generating technologies in human genomics, we are overwhelmed with the heap of …
A multi-scale expression and regulation knowledge base for Escherichia coli
CR Lamoureux, KT Decker, AV Sastry… - Nucleic Acids …, 2023 - academic.oup.com
Transcriptomic data is accumulating rapidly; thus, scalable methods for extracting
knowledge from this data are critical. Here, we assembled a top-down expression and …
knowledge from this data are critical. Here, we assembled a top-down expression and …
[PDF][PDF] Applications of deep learning in understanding gene regulation
Gene regulation is a central topic in cell biology. Advances in omics technologies and the
accumulation of omics data have provided better opportunities for gene regulation studies …
accumulation of omics data have provided better opportunities for gene regulation studies …
RNA dysregulation: an expanding source of cancer immunotherapy targets
Y Pan, KE Kadash-Edmondson, R Wang… - Trends in …, 2021 - cell.com
Cancer transcriptomes frequently exhibit RNA dysregulation. As the resulting aberrant
transcripts may be translated into cancer-specific proteins, there is growing interest in …
transcripts may be translated into cancer-specific proteins, there is growing interest in …
A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level
M Jiang, S Zhang, H Yin, Z Zhuo… - Briefings in …, 2023 - academic.oup.com
RNA alternative splicing, a post-transcriptional stage in eukaryotes, is crucial in cellular
homeostasis and disease processes. Due to the rapid development of the next-generation …
homeostasis and disease processes. Due to the rapid development of the next-generation …
[HTML][HTML] AI applications in functional genomics
We review the current applications of artificial intelligence (AI) in functional genomics. The
recent explosion of AI follows the remarkable achievements made possible by “deep …
recent explosion of AI follows the remarkable achievements made possible by “deep …
Deep learning in omics data analysis and precision medicine
J Martorell-Marugán, S Tabik… - Exon …, 2019 - exonpublications.com
The rise of omics techniques has resulted in an explosion of molecular data in modern
biomedical research. Together with information from medical images and clinical data, the …
biomedical research. Together with information from medical images and clinical data, the …