[HTML][HTML] Allostery in its many disguises: from theory to applications

SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky… - Structure, 2019 - cell.com
Allosteric regulation plays an important role in many biological processes, such as signal
transduction, transcriptional regulation, and metabolism. Allostery is rooted in the …

Molecular dynamics simulations of large macromolecular complexes

JR Perilla, BC Goh, CK Cassidy, B Liu… - Current opinion in …, 2015 - Elsevier
Connecting dynamics to structural data from diverse experimental sources, molecular
dynamics simulations permit the exploration of biological phenomena in unparalleled detail …

Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update

JS Parkinson, GL Hazelbauer, JJ Falke - Trends in microbiology, 2015 - cell.com
Motile Escherichia coli cells track gradients of attractant and repellent chemicals in their
environment with transmembrane chemoreceptor proteins. These receptors operate in …

Agrobacterium-mediated horizontal gene transfer: Mechanism, biotechnological application, potential risk and forestalling strategy

M Guo, J Ye, D Gao, N Xu, J Yang - Biotechnology advances, 2019 - Elsevier
The extraordinary capacity of Agrobacterium to transfer its genetic material to host cell
makes it evolve from phytopathogen to a powerful transgenic vector. Agrobacterium …

[HTML][HTML] Towards the idea of molecular brains

Y Timsit, SP Grégoire - International Journal of Molecular Sciences, 2021 - mdpi.com
How can single cells without nervous systems perform complex behaviours such as
habituation, associative learning and decision making, which are considered the hallmark of …

[HTML][HTML] CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao… - Elife, 2015 - elifesciences.org
Chemotactic responses in bacteria require large, highly ordered arrays of sensory proteins
to mediate the signal transduction that ultimately controls cell motility. A mechanistic …

From jammed solids to mechanical metamaterials: A brief review

J Huang, J Zhang, D Xu, S Zhang, H Tong… - Current Opinion in Solid …, 2023 - Elsevier
Here we review recent studies of mechanical metamaterials originating from or closely
related to marginally jammed solids. Unlike previous approaches mainly focusing on the …

The source of high signal cooperativity in bacterial chemosensory arrays

GE Piñas, V Frank, A Vaknin… - Proceedings of the …, 2016 - National Acad Sciences
The Escherichia coli chemosensory system consists of large arrays of transmembrane
chemoreceptors associated with a dedicated histidine kinase, CheA, and a linker protein …

[HTML][HTML] Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain

A Burt, CK Cassidy, P Ames, M Bacia-Verloop… - Nature …, 2020 - nature.com
Motile bacteria sense chemical gradients with transmembrane receptors organised in
supramolecular signalling arrays. Understanding stimulus detection and transmission at the …

[HTML][HTML] Bacterial chemotaxis coupling protein: Structure, function and diversity

Z Huang, X Pan, N Xu, M Guo - Microbiological research, 2019 - Elsevier
In most signal transduction systems, coupling or scaffold proteins establish crucial
connections between receptors and histidine kinases. These connections are important for …