Forging the basis for developing protein–ligand interaction scoring functions

Z Liu, M Su, L Han, J Liu, Q Yang, Y Li… - Accounts of chemical …, 2017 - ACS Publications
Conspectus In structure-based drug design, scoring functions are widely used for fast
evaluation of protein–ligand interactions. They are often applied in combination with …

Getting the most out of PubChem for virtual screening

S Kim - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: With the emergence of the 'big data'era, the biomedical research community
has great interest in exploiting publicly available chemical information for drug discovery …

PubChem 2019 update: improved access to chemical data

S Kim, J Chen, T Cheng, A Gindulyte, J He… - Nucleic acids …, 2019 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a key chemical information
resource for the biomedical research community. Substantial improvements were made in …

[HTML][HTML] PubChem protein, gene, pathway, and taxonomy data collections: bridging biology and chemistry through target-centric views of PubChem data

S Kim, T Cheng, S He, PA Thiessen, Q Li… - Journal of molecular …, 2022 - Elsevier
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database at the
US National Institutes of Health. Visited by millions of users every month, it plays a role as a …

[HTML][HTML] The Main Alkaloids in Uncaria rhynchophylla and Their Anti-Alzheimer's Disease Mechanism Determined by a Network Pharmacology Approach

P Zeng, XM Wang, CY Ye, HF Su, Q Tian - International Journal of …, 2021 - mdpi.com
Alzheimer's disease (AD) is a growing concern in modern society, and effective drugs for its
treatment are lacking. Uncaria rhynchophylla (UR) and its main alkaloids have been studied …

Artificial intelligence and machine-learning approaches in structure and ligand-based discovery of drugs affecting central nervous system

V Gautam, A Gaurav, N Masand, VS Lee, VM Patil - Molecular Diversity, 2023 - Springer
CNS disorders are indications with a very high unmet medical needs, relatively smaller
number of available drugs, and a subpar satisfaction level among patients and caregiver …

[HTML][HTML] A Tau Pathogenesis-Based Network Pharmacology Approach for Exploring the Protections of Chuanxiong Rhizoma in Alzheimer's Disease

P Zeng, HF Su, CY Ye, SW Qiu, A Shi… - Frontiers in …, 2022 - frontiersin.org
Alzheimer's disease (AD) is the most common cause of neurodegenerative dementia and
one of the top medical concerns worldwide. Currently, the approved drugs to treat AD are …

[HTML][HTML] PUG-View: programmatic access to chemical annotations integrated in PubChem

S Kim, PA Thiessen, T Cheng, J Zhang… - Journal of …, 2019 - Springer
PubChem is a chemical data repository that provides comprehensive information on various
chemical entities. It contains a wealth of chemical information from hundreds of data …

[HTML][HTML] Key Phytochemicals and Biological Functions of Chuanxiong Rhizoma Against Ischemic Stroke: A Network Pharmacology and Experimental Assessment

P Zeng, Y Yi, HF Su, CY Ye, YW Sun… - Frontiers in …, 2021 - frontiersin.org
Presently, the treatment options for ischemic stroke (IS) are limited due to the complicated
pathological process of the disease. Chuanxiong Rhizome (CR), also known as …

[HTML][HTML] Therapeutic Mechanism and Key Alkaloids of Uncaria rhynchophylla in Alzheimer's Disease From the Perspective of Pathophysiological Processes

P Zeng, HF Su, CY Ye, SW Qiu, Q Tian - Frontiers in Pharmacology, 2021 - frontiersin.org
Presently, there is a lack of effective disease-modifying drugs for the treatment of Alzheimer's
disease (AD). Uncaria rhynchophylla (UR) and its predominant active phytochemicals …