Subgenomic Stability of Progenitor Genomes During Repeated Allotetraploid Origins of the Same Grass Brachypodium hybridum

W Mu, K Li, Y Yang, A Breiman, J Yang… - Molecular Biology …, 2023 - academic.oup.com
Both homeologous exchanges and homeologous expression bias are generally found in
most allopolyploid species. Whether homeologous exchanges and homeologous …

Engines of innovation: biological origins of genome evolution

JA Shapiro - Biological Journal of the Linnean Society, 2023 - academic.oup.com
Genome change does not occur accidentally. The conventional Modern Synthesis view of
gradual evolution guided solely by natural selection fails to incorporate many important …

[HTML][HTML] Taxonomic Revision of the pulcherrima Clade of Metschnikowia (Fungi): Merger of Species

M Sipiczki - Taxonomy, 2022 - mdpi.com
The type strains of 10 small-spored species of the ascomycetous yeast genus
Metschnikowia usually form a compact group on the phylogenetic trees inferred from …

Demographic history inference and the polyploid continuum

PD Blischak, M Sajan, MS Barker, RN Gutenkunst - Genetics, 2023 - academic.oup.com
Polyploidy is an important generator of evolutionary novelty across diverse groups in the
Tree of Life, including many crops. However, the impact of whole-genome duplication …

Deciphering peanut complex genomes paves a way to understand its origin and domestication

Y Pan, Y Zhuang, T Liu, H Chen, L Wang… - Plant biotechnology …, 2023 - Wiley Online Library
Peanut (Arachis) is a key oil and protein crop worldwide with large genome. The genomes of
diploid and tetraploid peanuts have been sequenced, which were compared to decipher …

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes

JL Conover, JF Wendel - Molecular biology and evolution, 2022 - academic.oup.com
Whole-genome duplication (polyploidization) is among the most dramatic mutational
processes in nature, so understanding how natural selection differs in polyploids relative to …

[HTML][HTML] Does polyploidy inhibit sex chromosome evolution in angiosperms?

L He, E Hörandl - Frontiers in Plant Science, 2022 - frontiersin.org
Dioecy is rare in flowering plants (5–6% of species), but is often controlled genetically by sex-
linked regions (SLRs). It has so far been unclear whether, polyploidy affects sex …

Widespread deviant patterns of heterozygosity in whole-genome sequencing due to autopolyploidy, repeated elements, and duplication

X Dallaire, R Bouchard, P Hénault… - Genome Biology and …, 2023 - academic.oup.com
Most population genomic tools rely on accurate single nucleotide polymorphism (SNP)
calling and filtering to meet their underlying assumptions. However, genomic complexity …

Homoeologous exchange enables rapid evolution of tolerance to salinity and hyper-osmotic stresses in a synthetic allotetraploid wheat

B Wang, R Lv, Z Zhang, C Yang, H Xun… - Journal of …, 2022 - academic.oup.com
The link between polyploidy and enhanced adaptation to environmental stresses could be a
result of polyploidy itself harbouring higher tolerance to adverse conditions, or polyploidy …

Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium

VT Scarlett, JT Lovell, M Shao, J Phillips, S Shu… - Genetics, 2023 - academic.oup.com
The “genomic shock” hypothesis posits that unusual challenges to genome integrity such as
whole genome duplication may induce chaotic genome restructuring. Decades of research …