Theoretical study of hydrogen peroxide interacting with DNA base and DNA base pair in terms of ab initio method and ABEEMσπ/MM fluctuating charge potential …

CY Yu, ZZ Yang - Computational and Theoretical Chemistry, 2011 - Elsevier
The optimized geometries, interaction energies, dipole moments, and vibrational
frequencies of guanine-hydrogen peroxide (GHP), cytosine-hydrogen peroxide (CHP) …

DFT study of adenine‐uracil base pair damage by OH radical

X Liao, L Diao, L Kou, Z Li, M Li… - Journal of Physical …, 2015 - Wiley Online Library
The hydrogen abstraction and addition reactions of OH radical with A· U base pair have
been explored by using density functional theory (DFT) both in gas phase and in aqueous …

Effect of protonation on individual hydrogen bonds in the 8-oxoguanine-cytosine base pair: NMR, NBO and AIM analyses

A Ebrahimi, M Habibi-khorassani, A Haghani - Molecular Physics, 2011 - Taylor & Francis
Protonation increases the total binding energy of the 8-oxoguanine-cytosine (8OG: C) base
pair by 60–70% at the B3LYP/6-311++ G (d, p) level of theory. It changes the individual H …

Substituent effects in the tuning of excited-state intramolecular proton transfer and optical properties of the derivatives of 2-(2-hydroxyphenyl)-5-phenyl-1, 3, 4 …

R Jin, J Zhang - Theoretical Chemistry Accounts, 2009 - Springer
The intramolecular proton transfer process and optical properties of a series of derivatives of
2-(2-hydroxyphenyl)-5-phenyl-1, 3, 4-oxadiazole (HOXD) have been studied. The effects of …

Time-dependent density functional theory molecular dynamics simulation of doubly charged uracil in gas phase

P López-Tarifa, MA Hervé du Penhoat, R Vuilleumier… - Open Physics, 2014 - degruyter.com
We use time-dependent density functional theory and Born-Oppenheimer molecular
dynamics methods to investigate the fragmentation of doubly ionized uracil in gas phase …

A procedure to understanding the CG to AT transversion. SMD simulations from guanine oxidation pathways assisted by one H2O2 molecule in the CG basis pair

S Tolosa, JA Sanson, A Hidalgo - Journal of Molecular Liquids, 2020 - Elsevier
The CG to AT transversion in the gas and aqueous phases was studied through steered
molecular dynamic (SMD) simulations. The mechanism considered involved the guanine …

Study of scavenging action of zingerone towards the OH radical: formation of vanillin and ferulic acid

AK Prasad, PC Mishra - Journal of Physical Organic Chemistry, 2014 - Wiley Online Library
The scavenging action of zingerone, a phenolic anti‐oxidant, toward the hydroxyl radical
has been studied employing density functional theory. All the relevant potential energy …

羟基自由基和鸟嘌呤-胞嘧啶碱基对反应的密度泛函理论研究

李敏杰, 刁玲, 寇莉, 李重杲, 陆文聪 - 物理化学学报, 2015 - whxb.pku.edu.cn
为了解决年龄衰老, 基因突变和癌症等问题, 理解DNA 的氧化损伤机理非常重要.
本文利用密度泛函方法和极化连续介质模型在液相条件下研究了羟基自由基夺取鸟嘌呤 …

DNA lesions caused by ROS and RNOS: A review of interactions and reactions involving guanine

PK Shukla, PC Mishra - Practical Aspects of Computational Chemistry …, 2010 - Springer
DNA is constantly attacked by a large number of endogenous and exogenous reactive
oxygen species (ROS), reactive nitrogen oxide species (RNOS), and alkylating agents which …

[PDF][PDF] The effect of resveratrol on mRNA levels of DNA polymerase beta and oxidative DNA damage in H2O2-induced human colon cancer HT-29 cells

FS Shahrokhi, M Baazm, MT Goodarzi… - مجله ایرانی تحقیقات …, 2016‎ - scholar.archive.org
1 Department of Biochemistry and Genetics, School of Medicine, Arak University of Medical
Sciences, Arak, Iran. 2 Department of Anatomy, School of Medicine, Arak University of …