[HTML][HTML] Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

L Romero, S Contreras-Riquelme, M Lira… - Frontiers in …, 2022 - frontiersin.org
Gene regulation is a key process for all microorganisms, as it allows them to adapt to
different environmental stimuli. However, despite the relevance of gene expression control …

[HTML][HTML] A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma …

C Olivares-Yañez, E Sánchez, G Pérez-Lara… - Computational and …, 2021 - Elsevier
Botrytis cinerea and Trichoderma atroviride are two relevant fungi in agricultural systems. To
gain insights into these organisms' transcriptional gene regulatory networks (GRNs), we …

[HTML][HTML] A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp

E Galán-Vásquez, MC Gómez-García… - PLoS One, 2022 - journals.plos.org
Entamoeba are amoeboid extracellular parasites that represent an important group of
organisms for which the regulatory networks must be examined to better understand how …

Identification and expression of some plant cell wall-degrading enzymes present in three ontogenetics stages of Thecaphora frezii, a peanut (Arachis hypogaea L.) …

NW Soria, AC Figueroa, MS Díaz, RV Alasino, P Yang… - 2022 - ri.conicet.gov.ar
Peanuts can be affected by the presence of pathogenic microorganisms. The fungus
Thecaphora frezii (T. frezii), which belongs to the taxonomic class Ustilaginomycetes, is the …

[HTML][HTML] Construction and analysis of gene co-expression network in the pathogenic fungus Ustilago maydis

CV Soberanes-Gutiérrez, A Castillo-Jiménez… - Frontiers in …, 2022 - frontiersin.org
Introduction Biological systems respond to environmental disturbances and a wide range of
compounds through complex gene interaction networks. The enormous growth of …

[HTML][HTML] Gene Regulatory Network Inference and Gene Module Regulating Virulence in Fusarium oxysporum

R Cano, AR Lenz, E Galan-Vasquez… - Frontiers in …, 2022 - frontiersin.org
In this work, we inferred the gene regulatory network (GRN) of the fungus Fusarium
oxysporum by using the regulatory networks of Aspergillus nidulans FGSC A4, Neurospora …