HIV-1 drug resistance and resistance testing

DS Clutter, MR Jordan, S Bertagnolio… - Infection, Genetics and …, 2016 - Elsevier
The global scale-up of antiretroviral (ARV) therapy (ART) has led to dramatic reductions in
HIV-1 mortality and incidence. However, HIV drug resistance (HIVDR) poses a potential …

[HTML][HTML] Next-generation sequencing for infectious disease diagnosis and management: a report of the Association for Molecular Pathology

MI Lefterova, CJ Suarez, N Banaei… - The Journal of Molecular …, 2015 - Elsevier
Next-generation sequencing (NGS) technologies are increasingly being used for diagnosis
and monitoring of infectious diseases. Herein, we review the application of NGS in clinical …

High viral suppression and detection of dolutegravir-resistance associated mutations in treatment-experienced Tanzanian adults living with HIV-1 in Dar es Salaam

GM Bwire, BG Aiko, IH Mosha, MS Kilapilo… - Scientific Reports, 2023 - nature.com
To curb HIV infection rate in Tanzania, antiretroviral therapy (ART) has been scaled up since
2006, and in 2019, the country shifted to regimen including dolutegravir as a default first line …

Genotypic resistance testing of HIV-1 DNA in peripheral blood mononuclear cells

C Chu, D Armenia, C Walworth… - Clinical Microbiology …, 2022 - Am Soc Microbiol
SUMMARY HIV-1 DNA exists in nonintegrated linear and circular episomal forms and as
integrated proviruses. In patients with plasma viremia, most peripheral blood mononuclear …

Sofosbuvir/velpatasvir for 12 vs. 6 weeks for the treatment of recently acquired hepatitis C infection

GV Matthews, S Bhagani, M Van der Valk… - Journal of …, 2021 - Elsevier
Background & Aims Shortened duration therapy for acute and recent HCV infection has
been shown to be highly effective in several small non-randomised studies with direct-acting …

Moving towards hepatitis C microelimination among people living with human immunodeficiency virus in Australia: the CEASE study

M Martinello, J Yee, SR Bartlett, P Read… - Clinical Infectious …, 2020 - academic.oup.com
Background Microelimination of hepatitis C virus (HCV) among people living with human
immunodeficiency virus (HIV) may be feasible in Australia, given unrestricted access to …

Emergent drug resistance with integrase strand transfer inhibitor-based regimens

KJ Lepik, PR Harrigan, B Yip, L Wang, MA Robbins… - Aids, 2017 - journals.lww.com
Objectives: To estimate the incidence of and risk factors for emergent resistance to integrase
strand transfer inhibitor (INSTI) and nucleoside (-tide) reverse transcriptase inhibitors (NRTI) …

Pretreatment HIV-drug resistance in Mexico and its impact on the effectiveness of first-line antiretroviral therapy: a nationally representative 2015 WHO survey

S Ávila-Ríos, C García-Morales, M Matías-Florentino… - The lancet HIV, 2016 - thelancet.com
Background WHO has developed a global HIV-drug resistance surveillance strategy,
including assessment of pretreatment HIV-drug resistance. We aimed to do a nationally …

Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific Reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …

Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing

PL Tzou, P Ariyaratne, V Varghese, C Lee… - Journal of clinical …, 2018 - Am Soc Microbiol
The ability of next-generation sequencing (NGS) technologies to detect low frequency HIV-1
drug resistance mutations (DRMs) not detected by dideoxynucleotide Sanger sequencing …