A review of long‐branch attraction

J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …

The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

V Knoop - Current genetics, 2004 - Springer
Land plants exhibit a significant evolutionary plasticity in their mitochondrial DNA (mtDNA),
which contrasts with the more conservative evolution of their chloroplast genomes. Frequent …

The flowers in extant basal angiosperms and inferences on ancestral flowers

PK Endress - International Journal of Plant Sciences, 2001 - journals.uchicago.edu
This is a combination of a review and original data on floral structure, development, and
biology of representatives of all families of the ANITA grade and, in addition …

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

YL QIU, L Li, B Wang, JY XUE… - … of Systematics and …, 2010 - Wiley Online Library
An angiosperm phylogeny was reconstructed in a maximum likelihood analysis of
sequences of four mitochondrial genes, atp1, matR, nad5, and rps3, from 380 species that …

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics

H Brinkmann, M Van der Giezen, Y Zhou… - Systematic …, 2005 - academic.oup.com
In the context of exponential growing molecular databases, it becomes increasingly easy to
assemble large multigene data sets for phylogenomic studies. The expected increase of …

An empirical test of the midpoint rooting method

PN Hess, CA De Moraes Russo - Biological Journal of the …, 2007 - academic.oup.com
The outgroup method is widely used to root phylogenetic trees. An accurate root indication,
however, strongly depends on the availability of a proper outgroup. An alternate rooting …

The root of the angiosperms revisited

MJ Zanis, DE Soltis, PS Soltis… - Proceedings of the …, 2002 - National Acad Sciences
Most recent phylogenetic analyses of basal angiosperms have converged on the placement
of Amborella as sister to all other extant angiosperms. However, certain recent studies …

A nonflowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial, and nuclear genes

YL Qiu, L Li, B Wang, Z Chen… - … journal of plant …, 2007 - journals.uchicago.edu
Nucleotide sequences of seven chloroplast (atpB and rbcL, SSU and LSU rDNAs),
mitochondrial (atp1, LSU rDNA), and nuclear (18S rDNA) genes from 192 land plants and …

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus …

DR Hansen, SG Dastidar, Z Cai, C Penaflor… - Molecular Phylogenetics …, 2007 - Elsevier
We have determined the complete chloroplast genome sequences of four early-diverging
lineages of angiosperms, Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea …

Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots

SW Graham, RG Olmstead… - Molecular biology and …, 2002 - academic.oup.com
Phylogenetic rooting experiments demonstrate that two chloroplast genes from commelinoid
monocot taxa that represent the closest living relatives of the pickerelweed family …