Identification of small molecules using accurate mass MS/MS search

T Kind, H Tsugawa, T Cajka, Y Ma, Z Lai… - Mass spectrometry …, 2018 - Wiley Online Library
Tandem mass spectral library search (MS/MS) is the fastest way to correctly annotate MS/MS
spectra from screening small molecules in fields such as environmental analysis, drug …

Challenges and emergent solutions for LC‐MS/MS based untargeted metabolomics in diseases

L Cui, H Lu, YH Lee - Mass spectrometry reviews, 2018 - Wiley Online Library
In the past decade, advances in liquid chromatography‐mass spectrometry (LC‐MS) have
revolutionized untargeted metabolomics analyses. By mining metabolomes more deeply …

[HTML][HTML] CFM-ID 3.0: significantly improved ESI-MS/MS prediction and compound identification

Y Djoumbou-Feunang, A Pon, N Karu, J Zheng, C Li… - Metabolites, 2019 - mdpi.com
Metabolite identification for untargeted metabolomics is often hampered by the lack of
experimentally collected reference spectra from tandem mass spectrometry (MS/MS). To …

Nutrimetabolomics: an integrative action for metabolomic analyses in human nutritional studies

MM Ulaszewska, CH Weinert… - Molecular nutrition & …, 2019 - Wiley Online Library
The life sciences are currently being transformed by an unprecedented wave of
developments in molecular analysis, which include important advances in instrumental …

Next-generation mass spectrometry metabolomics revives the functional analysis of plant metabolic diversity

D Li, E Gaquerel - Annual Review of Plant Biology, 2021 - annualreviews.org
The remarkable diversity of specialized metabolites produced by plants has inspired several
decades of research and nucleated a long list of theories to guide empirical ecological …

Predicting ion mobility collision cross-sections using a deep neural network: DeepCCS

PL Plante, É Francovic-Fontaine, JC May… - Analytical …, 2019 - ACS Publications
Untargeted metabolomic measurements using mass spectrometry are a powerful tool for
uncovering new small molecules with environmental and biological importance. The small …

[HTML][HTML] Annotation: a computational solution for streamlining metabolomics analysis

X Domingo-Almenara, JR Montenegro-Burke… - Analytical …, 2018 - ncbi.nlm.nih.gov
Metabolite identification is still considered an imposing bottleneck in liquid chromatography
mass spectrometry (LC/MS) untargeted metabolomics. The identification workflow usually …

Autonomous METLIN-guided in-source fragment annotation for untargeted metabolomics

X Domingo-Almenara, JR Montenegro-Burke… - Analytical …, 2019 - ACS Publications
Computational metabolite annotation in untargeted profiling aims at uncovering neutral
molecular masses of underlying metabolites and assign those with putative identities …

Comprehensive strategy to construct in-house database for accurate and batch identification of small molecular metabolites

X Zhao, Z Zeng, A Chen, X Lu, C Zhao, C Hu… - Analytical …, 2018 - ACS Publications
Identification of the metabolites is an essential step in metabolomics study to interpret the
regulatory mechanism of pathological and physiological processes. However, it is still …

Knowledge-based metabolite annotation tool: CEU Mass Mediator

AG de la Fuente, J Godzien, MF López… - … of pharmaceutical and …, 2018 - Elsevier
Abstract CEU Mass Mediator (CMM) is an on-line tool for aiding researchers when
performing metabolite annotation. Its database is comprised of 279,318 real compounds …