Systems biology in immunology: a computational modeling perspective

RN Germain, M Meier-Schellersheim… - Annual review of …, 2011 - annualreviews.org
Systems biology is an emerging discipline that combines high-content, multiplexed
measurements with informatic and computational modeling methods to better understand …

PDK1 nucleates T cell receptor-induced signaling complex for NF-κB activation

KY Lee, F D'Acquisto, MS Hayden, JH Shim, S Ghosh - Science, 2005 - science.org
Activation of the transcription factor NF-κB after engagement of the T cell receptor (TCR) is
important for T cell proliferation and activation during the adaptive immune response …

A new look at T cell receptor signaling to nuclear factor-κB

S Paul, BC Schaefer - Trends in immunology, 2013 - cell.com
Antigen stimulation of T cell receptor (TCR) signaling to nuclear factor (NF)-κB is required for
T cell proliferation and differentiation of effector cells. The TCR-to-NF-κB pathway is …

Inhibitory ITAMs as novel regulators of immunity

U Blank, P Launay, M Benhamou… - Immunological …, 2009 - Wiley Online Library
Immune homeostasis is regulated by a finely tuned network of positive–negative regulatory
mechanisms that guarantees proper surveillance avoiding hyperactivity that would lead to …

[HTML][HTML] TCR microclusters form spatially segregated domains and sequentially assemble in calcium-dependent kinetic steps

J Yi, L Balagopalan, T Nguyen, KM McIntire… - Nature …, 2019 - nature.com
Engagement of the T cell receptor (TCR) by stimulatory ligand results in the rapid formation
of microclusters at sites of T cell activation. Whereas microclusters have been studied …

[HTML][HTML] TCR signal strength alters T–DC activation and interaction times and directs the outcome of differentiation

N Van Panhuys - Frontiers in immunology, 2016 - frontiersin.org
The ability of CD4+ T cells to differentiate into effector subsets underpins their ability to
shape the immune response and mediate host protection. During T cell receptor-induced …

Mathematical and computational models of immune-receptor signalling

B Goldstein, JR Faeder, WS Hlavacek - Nature Reviews Immunology, 2004 - nature.com
The process of signalling through receptors of the immune system involves highly connected
networks of interacting components. Understanding the often counter-intuitive behaviour of …

[HTML][HTML] Deletion of CD4 and CD8 coreceptors permits generation of αβT cells that recognize antigens independently of the MHC

F Van Laethem, SD Sarafova, JH Park, X Tai… - Immunity, 2007 - cell.com
The thymus generates major histocompatibility complex (MHC)-restricted αβT cells that only
recognize antigenic ligands in association with MHC or MHC-like molecules. We …

[HTML][HTML] Kinetic proofreading through the multi-step activation of the ZAP70 kinase underlies early T cell ligand discrimination

G Voisinne, M Locard-Paulet, C Froment, E Maturin… - Nature …, 2022 - nature.com
T cells recognize a few high-affinity antigens among a vast array of lower affinity antigens.
According to the kinetic proofreading model, antigen discrimination properties could be …

Nonreceptor protein-tyrosine phosphatases in immune cell signaling

LI Pao, K Badour, KA Siminovitch… - Annu. Rev. Immunol., 2007 - annualreviews.org
Tyrosyl phosphorylation plays a critical role in multiple signaling pathways regulating innate
and acquired immunity. Although tyrosyl phosphorylation is a reversible process, we know …