[HTML][HTML] Achievements and challenges of genomics-assisted breeding in forest trees: From marker-assisted selection to genome editing

S Ahmar, P Ballesta, M Ali, F Mora-Poblete - International Journal of …, 2021 - mdpi.com
Forest tree breeding efforts have focused mainly on improving traits of economic importance,
selecting trees suited to new environments or generating trees that are more resilient to …

[HTML][HTML] Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity

N Heslot, J Rutkoski, J Poland, JL Jannink, ME Sorrells - PloS one, 2013 - journals.plos.org
Genome-wide molecular markers are often being used to evaluate genetic diversity in
germplasm collections and for making genomic selections in breeding programs. To …

[HTML][HTML] Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids

B Tan, D Grattapaglia, GS Martins, KZ Ferreira… - BMC plant biology, 2017 - Springer
Background Genomic prediction is a genomics assisted breeding methodology that can
increase genetic gains by accelerating the breeding cycle and potentially improving the …

[HTML][HTML] Deep learning-empowered crop breeding: intelligent, efficient and promising

X Wang, H Zeng, L Lin, Y Huang, H Lin… - Frontiers in Plant …, 2023 - frontiersin.org
Crop breeding is one of the main approaches to increase crop yield and improve crop
quality. However, the breeding process faces challenges such as complex data, difficulties …

[HTML][HTML] Design of training populations for selective phenotyping in genomic prediction

D Akdemir, J Isidro-Sánchez - Scientific reports, 2019 - nature.com
Phenotyping is the current bottleneck in plant breeding, especially because next-generation
sequencing has decreased genotyping cost more than 100.000 fold in the last 20 years …

[HTML][HTML] Maximizing efficiency of genomic selection in CIMMYT's tropical maize breeding program

SA Atanda, M Olsen, J Burgueño, J Crossa… - Theoretical and Applied …, 2021 - Springer
Key message Historical data from breeding programs can be efficiently used to improve
genomic selection accuracy, especially when the training set is optimized to subset …

Prospects for genomic selection in cassava breeding

MD Wolfe, DP Del Carpio, O Alabi… - The Plant …, 2017 - Wiley Online Library
Cassava (Manihot esculenta Crantz) is a clonally propagated staple food crop in the tropics.
Genomic selection (GS) has been implemented at three breeding institutions in Africa to …

Does genomic selection have a future in plant breeding?

E Jonas, DJ De Koning - Trends in biotechnology, 2013 - cell.com
Plant breeding largely depends on phenotypic selection in plots and only for some, often
disease-resistance-related traits, uses genetic markers. The more recently developed …

Assessing genomic selection prediction accuracy in a dynamic barley breeding population

AH Sallam, JB Endelman, JL Jannink… - The Plant …, 2015 - Wiley Online Library
Prediction accuracy of genomic selection (GS) has been previously evaluated through
simulation and cross‐validation; however, validation based on progeny performance in a …

Deep kernel for genomic and near infrared predictions in multi-environment breeding trials

J Cuevas, O Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Kernel methods are flexible and easy to interpret and have been successfully used in
genomic-enabled prediction of various plant species. Kernel methods used in genomic …