Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

What is the “modified” CTAB protocol? Characterizing modifications to the CTAB DNA extraction protocol

JJ Schenk, LE Becklund, SJ Carey… - Applications in Plant …, 2023 - Wiley Online Library
Cetyltrimethylammonium bromide (CTAB)–based methods are widely used to isolate DNA
from plant tissues, but the unique chemical composition of secondary metabolites among …

Green plant genomes: What we know in an era of rapidly expanding opportunities

WJ Kress, DE Soltis, PJ Kersey… - Proceedings of the …, 2022 - National Acad Sciences
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …

A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022 - academic.oup.com
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …

[HTML][HTML] Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …

[HTML][HTML] Taming the beast: a revised classification of Cortinariaceae based on genomic data

K Liimatainen, JT Kim, L Pokorny, PM Kirk, B Dentinger… - Fungal Diversity, 2022 - Springer
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …

A new classification of Cyperaceae (Poales) supported by phylogenomic data

I Larridon, AR Zuntini, É Léveillé‐Bourret… - … of Systematics and …, 2021 - Wiley Online Library
Cyperaceae (sedges) are the third largest monocot family and are of considerable economic
and ecological importance. Sedges represent an ideal model family to study evolutionary …

[HTML][HTML] Tackling rapid radiations with targeted sequencing

I Larridon, T Villaverde, AR Zuntini, L Pokorny… - Frontiers in plant …, 2020 - frontiersin.org
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …

Precipitation is the main axis of tropical plant phylogenetic turnover across space and time

JJ Ringelberg, EJM Koenen, B Sauter, A Aebli… - Science …, 2023 - science.org
Early natural historians—Comte de Buffon, von Humboldt, and De Candolle—established
environment and geography as two principal axes determining the distribution of groups of …

[HTML][HTML] A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …