[HTML][HTML] Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

[HTML][HTML] From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

BR Ruhfel, MA Gitzendanner, PS Soltis… - BMC evolutionary …, 2014 - Springer
Background Next-generation sequencing has provided a wealth of plastid genome
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …

Plastome phylogenetics: 30 years of inferences into plant evolution

MA Gitzendanner, PS Soltis, TS Yi, DZ Li… - Advances in botanical …, 2018 - Elsevier
From restriction site analyses to whole plastid genome sequences, our understanding of
green plant (Viridiplantae;~ 500,000 extant species) evolutionary relationships over the past …

Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture

YY Yang, XJ Qu, R Zhang, GW Stull, TS Yi - Molecular Phylogenetics and …, 2021 - Elsevier
Plastid phylogenomic analyses have shed light on many recalcitrant relationships across the
angiosperm Tree of Life and continue to play an important role in plant phylogenetics …

Plastid phylogenomic analysis of green plants: a billion years of evolutionary history

MA Gitzendanner, PS Soltis, GKS Wong… - American Journal of …, 2018 - Wiley Online Library
Premise of the Study For the past one billion years, green plants (Viridiplantae) have
dominated global ecosystems, yet many key branches in their evolutionary history remain …

Plastid phylogenomics improve phylogenetic resolution in the Lauraceae

Y Song, WB Yu, YH Tan, JJ Jin, B Wang… - … of Systematics and …, 2020 - Wiley Online Library
The family Lauraceae is a major component of tropical and subtropical forests worldwide,
and includes some commercially important timber trees and medicinal plants. However …

Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae

R Zhang, YH Wang, JJ Jin, GW Stull… - Systematic …, 2020 - academic.oup.com
Phylogenomic analyses have helped resolve many recalcitrant relationships in the
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots

CF Barrett, WJ Baker, JR Comer, JG Conran… - New …, 2016 - Wiley Online Library
Despite progress based on multilocus, phylogenetic studies of the palms (order Arecales,
family Arecaceae), uncertainty remains in resolution/support among major clades and for the …

Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region

MJ Moore, N Hassan… - … Journal of Plant …, 2011 - journals.uchicago.edu
Recent plastid phylogenomic studies have helped clarify the backbone phylogeny of
angiosperms. However, the relatively limited taxon sampling in these studies has precluded …

Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes

R Sancho, CP Cantalapiedra… - New …, 2018 - Wiley Online Library
Few pangenomic studies have been conducted in plants, and none of them have focused
on the intraspecific diversity and evolution of their plastid genomes. We address this issue in …