GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …

The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …

Organellar (plastid and mitochondrial) genomes play an important role in resolving
phylogenetic relationships, and next-generation sequencing technologies have led to a …

Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …

Background Whole-genome sequencing (WGS) projects provide short read nucleotide
sequences from nuclear and possibly organelle DNA depending on the source of origin …

Background The development of long-read sequencing technologies, such as single-
molecule real-time (SMRT) sequencing by PacBio, has produced a revolution in the …

Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic
origin. In recent decades, advances in sequencing technologies have contributed to a …

We present RaGOO, a reference-guided contig ordering and orienting tool that leverages
the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies …

The advent and advance of next generation sequencing over the past two decades made it
possible to accumulate large quantities of sequence reads that could be used to assemble …

Organelle genomics has become an increasingly important research field, with applications
in molecular modeling, phylogeny, taxonomy, population genetics and biodiversity …