Large-scale mining and analysis of bacterial datasets contribute to the comprehensive
characterization of complex microbial dynamics within a microbiome and among different …

Whole genome sequencing of bacteria has become daily routine in many fields. Advances
in DNA sequencing technologies and continuously dropping costs have resulted in a …

The rapidly increasing availability of microbial genome sequences has led to a growing
demand for bioinformatics software tools that support the functional analysis based on the …

High throughput sequencing is now fast and cheap enough to be considered part of the
toolbox for investigating bacteria, and there are thousands of bacterial genome sequences …

Abstract MicrobiomeDB (http://microbiomeDB. org) is a data discovery and analysis platform
that empowers researchers to fully leverage experimental variables to interrogate …

The microbial genome database (MBGD) for comparative analysis is a platform for microbial
comparative genomics based on automated ortholog group identification. A prominent …

Fully exploiting the wealth of data in current bacterial population genomics datasets requires
synthesizing and integrating different types of analysis across millions of base pairs in …

Background The opportunities for bacterial population genomics that are being realised by
the application of parallel nucleotide sequencing require novel bioinformatics platforms …

We present here HOBACGEN, a database system devoted to comparative genomics in
bacteria. HOBACGEN contains all available protein genes from bacteria, archaea, and …

The vast number of microbial sequences resulting from sequencing efforts using new
technologies require us to re-assess currently available analysis methodologies and tools …