[PDF][PDF] The structural basis of peptide-protein binding strategies
Peptide-protein interactions are very prevalent, mediating key processes such as signal
transduction and protein trafficking. How can peptides overcome the entropic cost involved …
transduction and protein trafficking. How can peptides overcome the entropic cost involved …
[PDF][PDF] Structural and dynamic determinants of protein-peptide recognition
Protein-peptide interactions play important roles in many cellular processes, including signal
transduction, trafficking, and immune recognition. Protein conformational changes upon …
transduction, trafficking, and immune recognition. Protein conformational changes upon …
Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how
Highlights•Accrual of peptide–protein complex structures allowed their detailed
characterization.•This has lead to rapid progress in peptide docking, based on diverse …
characterization.•This has lead to rapid progress in peptide docking, based on diverse …
[PDF][PDF] Protein-peptide interactions adopt the same structural motifs as monomeric protein folds
P Vanhee, F Stricher, L Baeten, E Verschueren… - Structure, 2009 - cell.com
We compared the modes of interaction between protein-peptide interfaces and those
observed within monomeric proteins and found surprisingly few differences. Over 65% of …
observed within monomeric proteins and found surprisingly few differences. Over 65% of …
Computational design of peptide ligands
Peptides possess several attractive features when compared to small molecule and protein
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …
Detection of peptide‐binding sites on protein surfaces: The first step toward the modeling and targeting of peptide‐mediated interactions
A Lavi, CH Ngan, D Movshovitz‐Attias… - Proteins: Structure …, 2013 - Wiley Online Library
Peptide‐mediated interactions, in which a short linear motif binds to a globular domain, play
major roles in cellular regulation. An accurate structural model of this type of interaction is an …
major roles in cellular regulation. An accurate structural model of this type of interaction is an …
PepX: a structural database of non-redundant protein–peptide complexes
Although protein–peptide interactions are estimated to constitute up to 40% of all protein
interactions, relatively little information is available for the structural details of these …
interactions, relatively little information is available for the structural details of these …
Is protein context responsible for peptide-mediated interactions?
Many cell signaling pathways are orchestrated by the weak, transient, and reversible protein–
protein interactions that are mediated by the binding of a short peptide segment in one …
protein interactions that are mediated by the binding of a short peptide segment in one …
[HTML][HTML] High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Peptide-protein interactions contribute a significant fraction of the protein-protein
interactome. Accurate modeling of these interactions is challenging due to the vast …
interactome. Accurate modeling of these interactions is challenging due to the vast …
Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions
Peptide–protein interactions are among the most prevalent and important interactions in the
cell, but a large fraction of those interactions lack detailed structural characterization. The …
cell, but a large fraction of those interactions lack detailed structural characterization. The …