[PDF][PDF] The structural basis of peptide-protein binding strategies

N London, D Movshovitz-Attias, O Schueler-Furman - Structure, 2010 - cell.com
Peptide-protein interactions are very prevalent, mediating key processes such as signal
transduction and protein trafficking. How can peptides overcome the entropic cost involved …

[PDF][PDF] Structural and dynamic determinants of protein-peptide recognition

O Dagliyan, EA Proctor, KM D'Auria, F Ding… - Structure, 2011 - cell.com
Protein-peptide interactions play important roles in many cellular processes, including signal
transduction, trafficking, and immune recognition. Protein conformational changes upon …

Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how

N London, B Raveh, O Schueler-Furman - Current opinion in structural …, 2013 - Elsevier
Highlights•Accrual of peptide–protein complex structures allowed their detailed
characterization.•This has lead to rapid progress in peptide docking, based on diverse …

[PDF][PDF] Protein-peptide interactions adopt the same structural motifs as monomeric protein folds

P Vanhee, F Stricher, L Baeten, E Verschueren… - Structure, 2009 - cell.com
We compared the modes of interaction between protein-peptide interfaces and those
observed within monomeric proteins and found surprisingly few differences. Over 65% of …

Computational design of peptide ligands

P Vanhee, AM van der Sloot, E Verschueren… - Trends in …, 2011 - cell.com
Peptides possess several attractive features when compared to small molecule and protein
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …

Detection of peptide‐binding sites on protein surfaces: The first step toward the modeling and targeting of peptide‐mediated interactions

A Lavi, CH Ngan, D Movshovitz‐Attias… - Proteins: Structure …, 2013 - Wiley Online Library
Peptide‐mediated interactions, in which a short linear motif binds to a globular domain, play
major roles in cellular regulation. An accurate structural model of this type of interaction is an …

PepX: a structural database of non-redundant protein–peptide complexes

P Vanhee, J Reumers, F Stricher, L Baeten… - Nucleic acids …, 2010 - academic.oup.com
Although protein–peptide interactions are estimated to constitute up to 40% of all protein
interactions, relatively little information is available for the structural details of these …

Is protein context responsible for peptide-mediated interactions?

P Zhou, Q Miao, F Yan, Z Li, Q Jiang, L Wen… - Molecular Omics, 2019 - pubs.rsc.org
Many cell signaling pathways are orchestrated by the weak, transient, and reversible protein–
protein interactions that are mediated by the binding of a short peptide segment in one …

[HTML][HTML] High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock

N Alam, O Goldstein, B Xia, KA Porter… - PLoS computational …, 2017 - journals.plos.org
Peptide-protein interactions contribute a significant fraction of the protein-protein
interactome. Accurate modeling of these interactions is challenging due to the vast …

Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions

N London, B Raveh, E Cohen, G Fathi… - Nucleic acids …, 2011 - academic.oup.com
Peptide–protein interactions are among the most prevalent and important interactions in the
cell, but a large fraction of those interactions lack detailed structural characterization. The …