Gene expression analysis identifies global gene dosage sensitivity in cancer
Many cancer-associated somatic copy number alterations (SCNAs) are known. Currently,
one of the challenges is to identify the molecular downstream effects of these variants …
one of the challenges is to identify the molecular downstream effects of these variants …
[HTML][HTML] Pan-cancer patterns of somatic copy number alteration
Determining how somatic copy number alterations (SCNAs) promote cancer is an important
goal. We characterized SCNA patterns in 4,934 cancers from The Cancer Genome Atlas …
goal. We characterized SCNA patterns in 4,934 cancers from The Cancer Genome Atlas …
The landscape of somatic copy-number alteration across human cancers
R Beroukhim, CH Mermel, D Porter, G Wei… - Nature, 2010 - nature.com
A powerful way to discover key genes with causal roles in oncogenesis is to identify
genomic regions that undergo frequent alteration in human cancers. Here we present high …
genomic regions that undergo frequent alteration in human cancers. Here we present high …
DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes
Somatic copy-number alterations (SCNA) are a hallmark of many cancer types, but the
mechanistic basis underlying their genome-wide patterns remains incompletely understood …
mechanistic basis underlying their genome-wide patterns remains incompletely understood …
[HTML][HTML] Somatic copy number alterations in human cancers: an analysis of publicly available data from the cancer genome atlas
Somatic copy number alterations (SCNAs) are a pervasive trait of human cancers that
contributes to tumorigenesis by affecting the dosage of multiple genes at the same time. In …
contributes to tumorigenesis by affecting the dosage of multiple genes at the same time. In …
[HTML][HTML] Transcriptional effects of copy number alterations in a large set of human cancers
A Bhattacharya, RD Bense… - Nature …, 2020 - nature.com
Copy number alterations (CNAs) can promote tumor progression by altering gene
expression levels. Due to transcriptional adaptive mechanisms, however, CNAs do not …
expression levels. Due to transcriptional adaptive mechanisms, however, CNAs do not …
[HTML][HTML] Genomic basis for RNA alterations in cancer
PCAWG Transcriptome Core Group Calabrese Claudia … - Nature, 2020 - nature.com
Transcript alterations often result from somatic changes in cancer genomes. Various forms of
RNA alterations have been described in cancer, including overexpression, altered splicing …
RNA alterations have been described in cancer, including overexpression, altered splicing …
[HTML][HTML] Signatures of copy number alterations in human cancer
Gains and losses of DNA are prevalent in cancer and emerge as a consequence of inter-
related processes of replication stress, mitotic errors, spindle multipolarity and breakage …
related processes of replication stress, mitotic errors, spindle multipolarity and breakage …
[HTML][HTML] Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations
BB Tuch, RR Laborde, X Xu, J Gu, CB Chung… - PloS one, 2010 - journals.plos.org
Due to growing throughput and shrinking cost, massively parallel sequencing is rapidly
becoming an attractive alternative to microarrays for the genome-wide study of gene …
becoming an attractive alternative to microarrays for the genome-wide study of gene …
[PDF][PDF] Profound tissue specificity in proliferation control underlies cancer drivers and aneuploidy patterns
LM Sack, T Davoli, MZ Li, Y Li, Q Xu, K Naxerova… - Cell, 2018 - cell.com
Genomics has provided a detailed structural description of the cancer genome. Identifying
oncogenic drivers that work primarily through dosage changes is a current challenge …
oncogenic drivers that work primarily through dosage changes is a current challenge …