The emerging complexity of gene fusions in cancer

F Mertens, B Johansson, T Fioretos… - Nature Reviews Cancer, 2015 - nature.com
Structural chromosome rearrangements may result in the exchange of coding or regulatory
DNA sequences between genes. Many such gene fusions are strong driver mutations in …

Fusion genes and their discovery using high throughput sequencing

MJ Annala, BC Parker, W Zhang, M Nykter - Cancer letters, 2013 - Elsevier
Fusion genes are hybrid genes that combine parts of two or more original genes. They can
form as a result of chromosomal rearrangements or abnormal transcription, and have been …

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

NS Latysheva, MM Babu - Nucleic acids research, 2016 - academic.oup.com
Although gene fusions have been recognized as important drivers of cancer for decades,
our understanding of the prevalence and function of gene fusions has been revolutionized …

[HTML][HTML] A multiplexed amplicon approach for detecting gene fusions by next-generation sequencing

C Beadling, AI Wald, A Warrick, TL Neff, S Zhong… - The Journal of molecular …, 2016 - Elsevier
Chromosomal rearrangements that result in oncogenic gene fusions are clinically important
drivers of many cancer types. Rapid and sensitive methods are therefore needed to detect a …

TumorFusions: an integrative resource for cancer-associated transcript fusions

X Hu, Q Wang, M Tang, F Barthel, S Amin… - Nucleic acids …, 2018 - academic.oup.com
Gene fusion represents a class of molecular aberrations in cancer and has been exploited
for therapeutic purposes. In this paper we describe TumorFusions, a data portal that …

[HTML][HTML] Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

CP Giacomini, S Sun, S Varma, AH Shain… - PLoS …, 2013 - journals.plos.org
Gene fusions, like BCR/ABL1 in chronic myelogenous leukemia, have long been recognized
in hematologic and mesenchymal malignancies. The recent finding of gene fusions in …

[HTML][HTML] Identification of fusion genes in breast cancer by paired-end RNA-sequencing

H Edgren, A Murumagi, S Kangaspeska, D Nicorici… - Genome biology, 2011 - Springer
Background Until recently, chromosomal translocations and fusion genes have been an
underappreciated class of mutations in solid tumors. Next-generation sequencing …

The impact of translocations and gene fusions on cancer causation

F Mitelman, B Johansson, F Mertens - Nature Reviews Cancer, 2007 - nature.com
Chromosome aberrations, in particular translocations and their corresponding gene fusions,
have an important role in the initial steps of tumorigenesis; at present, 358 gene fusions …

An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

XS Wang, JR Prensner, G Chen, Q Cao, B Han… - Nature …, 2009 - nature.com
Cancer genomes contain many aberrant gene fusions—a few that drive disease and many
more that are nonspecific passengers. We developed an algorithm (the concept signature …

[HTML][HTML] Development and clinical validation of a large fusion gene panel for pediatric cancers

F Chang, F Lin, K Cao, LF Surrey, R Aplenc… - The Journal of Molecular …, 2019 - Elsevier
Gene fusions are one of the most common genomic alterations in pediatric cancer. Many
fusions encode oncogenic drivers and play important roles in cancer diagnosis, risk …