Promoters in the environment: transcriptional regulation in its natural context

I Cases, V De Lorenzo - Nature Reviews Microbiology, 2005 - nature.com
Transcriptional activation of many bacterial promoters in their natural environment is not a
simple on/off decision. The expression of cognate genes is integrated in layers of iterative …

Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

A Barnard, A Wolfe, S Busby - Current opinion in microbiology, 2004 - Elsevier
Most bacterial promoters are regulated by several signals. This is reflected in the complexity
of their organization, with multiple binding sites for different transcription factors. Studies of a …

Transcription factor function and promoter architecture govern the evolution of bacterial regulons

JC Perez, EA Groisman - Proceedings of the National …, 2009 - National Acad Sciences
Evolutionary changes in ancestral regulatory circuits can bring about phenotypic differences
between related organisms. Studies of regulatory circuits in eukaryotes suggest that these …

Transcription activation in bacteria: ancient and modern

SJW Busby - Microbiology, 2019 - microbiologyresearch.org
Activation of the transcription of genes is central to many processes of adaptation and
differentiation in bacteria. Here, I review the molecular mechanisms by which transcription …

[HTML][HTML] Evolution of transcriptional regulatory circuits in bacteria

JC Perez, EA Groisman - Cell, 2009 - cell.com
Related organisms typically respond to a given cue by altering the level or activity of
orthologous transcription factors, which, paradoxically, often regulate expression of distinct …

Non-transcriptional regulatory processes shape transcriptional network dynamics

JCJ Ray, JJ Tabor, OA Igoshin - Nature Reviews Microbiology, 2011 - nature.com
Abstract Information about the extra-or intracellular environment is often captured as
biochemical signals that propagate through regulatory networks. These signals eventually …

Transcriptional regulatory networks in bacteria: from input signals to output responses

ASN Seshasayee, P Bertone, GM Fraser… - Current opinion in …, 2006 - Elsevier
Transcriptional regulatory systems play a central role in coordinating bacterial responses to
diverse stimuli. These systems can be studied in progressive stages: from input signals to …

Regulation by transcription factors in bacteria: beyond description

E Balleza, LN Lopez-Bojorquez… - FEMS microbiology …, 2008 - academic.oup.com
Transcription is an essential step in gene expression and its understanding has been one of
the major interests in molecular and cellular biology. By precisely tuning gene expression …

Dissecting specific and global transcriptional regulation of bacterial gene expression

L Gerosa, K Kochanowski, M Heinemann… - Molecular systems …, 2013 - embopress.org
Gene expression is regulated by specific transcriptional circuits but also by the global
expression machinery as a function of growth. Simultaneous specific and global regulation …

The evolution of genetic regulatory systems in bacteria

HH McAdams, B Srinivasan, AP Arkin - Nature Reviews Genetics, 2004 - nature.com
The genomes of bacterial species show enormous plasticity in the function of individual
genes, in genome organization and in regulatory organization. Over millions of years, both …