Methods for mapping 3D chromosome architecture

R Kempfer, A Pombo - Nature Reviews Genetics, 2020 - nature.com
Determining how chromosomes are positioned and folded within the nucleus is critical to
understanding the role of chromatin topology in gene regulation. Several methods are …

Genome-wide mapping and analysis of chromosome architecture

AD Schmitt, M Hu, B Ren - Nature reviews Molecular cell biology, 2016 - nature.com
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …

A decade of 3C technologies: insights into nuclear organization

E De Wit, W De Laat - Genes & development, 2012 - genesdev.cshlp.org
Over the past 10 years, the development of chromosome conformation capture (3C)
technology and the subsequent genomic variants thereof have enabled the analysis of …

Understanding 3D genome organization by multidisciplinary methods

I Jerkovic, G Cavalli - Nature Reviews Molecular Cell Biology, 2021 - nature.com
Understanding how chromatin is folded in the nucleus is fundamental to understanding its
function. Although 3D genome organization has been historically difficult to study owing to a …

The second decade of 3C technologies: detailed insights into nuclear organization

A Denker, W De Laat - Genes & development, 2016 - genesdev.cshlp.org
The relevance of three-dimensional (3D) genome organization for transcriptional regulation
and thereby for cellular fate at large is now widely accepted. Our understanding of the …

The macro and micro of chromosome conformation capture

VY Goel, AS Hansen - Wiley Interdisciplinary Reviews …, 2021 - Wiley Online Library
The 3D organization of the genome facilitates gene regulation, replication, and repair,
making it a key feature of genomic function and one that remains to be properly understood …

[HTML][HTML] Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function

RP McCord, N Kaplan, L Giorgetti - Molecular cell, 2020 - cell.com
Rapidly developing technologies have recently fueled an exciting era of discovery in the
field of chromosome structure and nuclear organization. In addition to chromosome …

Chromatin globules: a common motif of higher order chromosome structure?

A Sanyal, D Baù, MA Martí-Renom, J Dekker - Current opinion in cell …, 2011 - Elsevier
Recent technological advances in the field of chromosome conformation capture are
facilitating tremendous progress in the ability to map the three-dimensional (3D) …

[HTML][HTML] The era of 3D and spatial genomics

BAM Bouwman, N Crosetto, M Bienko - Trends in genetics, 2022 - cell.com
Over a decade ago the advent of high-throughput chromosome conformation capture (Hi-C)
sparked a new era of 3D genomics. Since then the number of methods for mapping the 3D …

Hi-C: a method to study the three-dimensional architecture of genomes.

NL Van Berkum, E Lieberman-Aiden, L Williams… - JoVE (Journal of …, 2010 - jove.com
The three-dimensional folding of chromosomes compartmentalizes the genome and and
can bring distant functional elements, such as promoters and enhancers, into close spatial …