[HTML][HTML] A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

N Vitulo, C Forcato, EC Carpinelli, A Telatin… - BMC plant biology, 2014 - Springer
Background Alternative splicing (AS) significantly enhances transcriptome complexity. It is
differentially regulated in a wide variety of cell types and plays a role in several cellular …

[HTML][HTML] Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

SA Filichkin, HD Priest, SA Givan, R Shen… - Genome …, 2010 - genome.cshlp.org
Alternative splicing can enhance transcriptome plasticity and proteome diversity. In plants,
alternative splicing can be manifested at different developmental stages, and is frequently …

[HTML][HTML] Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

Y Sun, H Xiao - BMC genomics, 2015 - Springer
Background Alternative splicing (AS) regulates multiple biological processes including
flowering, circadian and stress response in plant. Although accumulating evidences indicate …

Global identification of alternative splicing via comparative analysis of SMRT‐and Illumina‐based RNA‐seq in strawberry

Y Li, C Dai, C Hu, Z Liu, C Kang - The Plant Journal, 2017 - Wiley Online Library
Alternative splicing (AS) is a key post‐transcriptional regulatory mechanism, yet little
information is known about its roles in fruit crops. Here, AS was globally analyzed in the wild …

[HTML][HTML] Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements

ASN Reddy, MF Rogers, DN Richardson… - Frontiers in plant …, 2012 - frontiersin.org
Extensive alternative splicing (AS) of precursor mRNAs (pre-mRNAs) in multicellular
eukaryotes increases the protein-coding capacity of a genome and allows novel ways to …

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

Y Marquez, JWS Brown, C Simpson, A Barta… - Genome …, 2012 - genome.cshlp.org
Alternative splicing (AS) is a key regulatory mechanism that contributes to transcriptome and
proteome diversity. As very few genome-wide studies analyzing AS in plants are available …

Integrating omics and alternative splicing reveals insights into grape response to high temperature

J Jiang, X Liu, C Liu, G Liu, S Li, L Wang - Plant Physiology, 2017 - academic.oup.com
Heat stress is one of the primary abiotic stresses that limit crop production. Grape (Vitis
vinifera) is a cultivated fruit with high economic value throughout the world, with its growth …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Alternative splicing: enhancing ability to cope with stress via transcriptome plasticity

AM Mastrangelo, D Marone, G Laidò, AM De Leonardis… - Plant Science, 2012 - Elsevier
Alternative splicing is a mechanism for the regulation of gene expression that is widespread
in higher eukaryotes. Genome-wide approaches, based on comparison of expressed and …