[HTML][HTML] Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton

Y Wang, Z Ning, Y Hu, J Chen, R Zhao, H Chen, N Ai… - PLoS …, 2015 - journals.plos.org
Upland cotton (Gossypium hirsutum L., 2n= 52, AADD) is an allotetraploid, therefore the
discovery of single nucleotide polymorphism (SNP) markers is difficult. The recent …

[HTML][HTML] Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence …

C Lu, C Zou, Y Zhang, D Yu, H Cheng, P Jiang… - BMC genomics, 2015 - Springer
Background Tetraploid cotton contains two sets of homologous chromosomes, the At-and Dt-
subgenomes. Consequently, many markers in cotton were mapped to multiple positions …

[HTML][HTML] Development and mapping of SNP assays in allotetraploid cotton

RL Byers, DB Harker, SM Yourstone… - Theoretical and Applied …, 2012 - Springer
A narrow germplasm base and a complex allotetraploid genome have made the discovery of
single nucleotide polymorphism (SNP) markers difficult in cotton (Gossypium hirsutum). To …

Detection, validation, and application of genotyping‐by‐sequencing based single nucleotide polymorphisms in upland cotton

MS Islam, GN Thyssen, JN Jenkins… - The Plant …, 2015 - Wiley Online Library
The presence of two closely related subgenomes in the allotetraploid Upland cotton,
combined with a narrow genetic base of the cultivated varieties, has hindered the …

Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments

X Yang, X Zhou, X Wang, Z Li, Y Zhang, H Liu, L Wu… - Euphytica, 2015 - Springer
Cotton is an important fiber crop worldwide. Improved fiber quality is a driving force for cotton
genetic studies and breeding. A BC 1 population containing 115 individuals from a cross …

[HTML][HTML] Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

C Shen, X Jin, D Zhu, Z Lin - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.), as the world's most utilized textile fibre
source, is an important, economically valuable crop worldwide. Understanding the genomic …

A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

H Ashrafi, AM Hulse‐Kemp, F Wang, SS Yang… - The plant …, 2015 - Wiley Online Library
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …

[HTML][HTML] Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …

[HTML][HTML] High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton …

K Zhang, V Kuraparthy, H Fang, L Zhu, S Sood… - BMC genomics, 2019 - Springer
Background Improving fiber quality and yield are the primary research objectives in cotton
breeding for enhancing the economic viability and sustainability of Upland cotton …

Transcriptome and Complexity-Reduced, DNA-Based Identification of Intraspecies Single-Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L.

QH Zhu, A Spriggs, JM Taylor… - G3: Genes, Genomes …, 2014 - academic.oup.com
Varietal single nucleotide polymorphisms (SNPs) are the differences within one of the two
subgenomes between different tetraploid cotton varieties and have not been practically used …