Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …

Prokaryotic genomes: the emerging paradigm of genome-based microbiology

EV Koonin, MY Galperin - Current opinion in genetics & development, 1997 - Elsevier
Comparative analysis of the complete sequences of seven bacterial and three archaeal
genomes leads to the first generalizations of emerging genome-based microbiology. Protein …

[HTML][HTML] Comparative genomics of Archaea: how much have we learned in six years, and what's next?

KS Makarova, EV Koonin - Genome biology, 2003 - Springer
Archaea comprise one of the three distinct domains of life (with bacteria and eukaryotes).
With 16 complete archaeal genomes sequenced to date, comparative genomics has …

[HTML][HTML] Archaeal genomics: do archaea have a mixed heritage?

WF Doolittle, JM Logsdon Jr - Current Biology, 1998 - cell.com
Archaeal genomics: Do archaea have a mixed heritage?: Current Biology Skip to Main
Content Advertisement Current Biology This journal offers authors two options (open access or …

Genomes in flux: the evolution of archaeal and proteobacterial gene content

B Snel, P Bork, MA Huynen - Genome research, 2002 - genome.cshlp.org
In the course of evolution, genomes are shaped by processes like gene loss, gene
duplication, horizontal gene transfer, and gene genesis (the de novo origin of genes). Here …

Evolution of microbial genomics: conceptual shifts over a quarter century

EV Koonin, KS Makarova, YI Wolf - Trends in microbiology, 2021 - cell.com
Prokaryote genomics started in earnest in 1995, with the complete sequences of two small
bacterial genomes, those of Haemophilus influenzae and Mycoplasma genitalium. During …

[HTML][HTML] Archaeal genomics: an overview

GJ Olsen, CR Woese - Cell, 1997 - cell.com
The Genome that by the turn of the century, 100 microbial genomes It is self-evident that the
genome (its structure and orgawill have been sequenced. At the time, microbial ge- nization) …

Assessing evolutionary relationships among microbes from whole-genome analysis

JA Eisen - Current opinion in microbiology, 2000 - Elsevier
The determination and analysis of complete genome sequences have recently enabled
many major advances to be made in the area of microbial evolutionary biology. These …

[HTML][HTML] A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin… - Nature, 2009 - nature.com
Sequencing of bacterial and archaeal genomes has revolutionized our understanding of the
many roles played by microorganisms. There are now nearly 1,000 completed bacterial and …

En route to a genome-based classification of Archaea and Bacteria?

HP Klenk, M Göker - Systematic and applied microbiology, 2010 - Elsevier
Given the considerable promise whole-genome sequencing offers for phylogeny and
classification, it is surprising that microbial systematics and genomics have not yet been …