Archaeogenomic Evidence of Punctuated Genome Evolution in Gossypium

SA Palmer, AJ Clapham, P Rose… - Molecular biology …, 2012 - academic.oup.com
Transposable elements (TEs) are drivers of evolution resulting in episodic surges of genetic
innovation and genomic reorganization (Oliver KR, Greene WK. 2009. TEs: powerful …

Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy

J Rong, JE Bowers, SR Schulze… - Genome …, 2005 - genome.cshlp.org
Both ancient and recent polyploidy, together with post-polyploidization loss of many
duplicated gene copies, complicates angiosperm comparative genomics. To explore an …

Comparative genomics of an unusual biogeographic disjunction in the cotton tribe (Gossypieae) yields insights into genome downsizing

CE Grover, MA Arick, JL Conover… - Genome Biology and …, 2017 - academic.oup.com
Long-distance insular dispersal is associated with divergence and speciation because of
founder effects and strong genetic drift. The cotton tribe (Gossypieae) has experienced …

Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing

CE Grover, MA Arick, A Thrash… - Genome Biology and …, 2019 - academic.oup.com
We employed phylogenomic methods to study molecular evolutionary processes and
phylogeny in the geographically widely dispersed New World diploid cottons (Gossypium …

An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression

JF Wendel, A Schnabel, T Seelanan - Molecular Phylogenetics and …, 1995 - Elsevier
The New World allopolyploid (AD-genome) cottons (Gossypium) originated through
hybridization of ancestral diploid species that presently have allopatric ranges in Africa-Asia …

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium

JS Hawkins, G Hu, RA Rapp, JL Grafenberg… - …, 2008 - cdnsciencepub.com
Transposable elements contribute significantly to plant genome evolution in myriad ways,
ranging from local insertional mutations to global effects exerted on genome size through …

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome …

G Huang, Z Wu, RG Percy, M Bai, Y Li… - Nature …, 2020 - nature.com
Upon assembling the first Gossypium herbaceum (A1) genome and substantially improving
the existing Gossypium arboreum (A2) and Gossypium hirsutum ((AD) 1) genomes, we …

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

JS Hawkins, HR Kim, JD Nason, RA Wing… - Genome …, 2006 - genome.cshlp.org
The DNA content of eukaryotic nuclei (C-value) varies∼ 200,000-fold, but there is only a∼
20-fold variation in the number of protein-coding genes. Hence, most C-value variation is …

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)

CE Grover, HR Kim, RA Wing, AH Paterson… - The Plant …, 2007 - Wiley Online Library
Genome sizes vary by several orders of magnitude, driven by mechanisms such as
illegitimate recombination and transposable element proliferation. Prior analysis of the CesA …

Cryptic repeated genomic recombination during speciation in Gossypium gossypioides

R Cronn, RL Small, T Haselkorn, JF Wendel - Evolution, 2003 - Wiley Online Library
Abstract The Mexican cotton Gossypium gossypioides is a perplexing entity, with conflicting
morphological, cytogenetic, and molecular evidence of its phylogenetic affinity to other …