Nuclear and cytoplasmic lncRNAs in root tips of the model legume Medicago truncatula under control and submergence

MA Reynoso, FA Blanco, ME Zanetti - IUBMB life, 2023 - Wiley Online Library
In this study, we aimed to identify long noncoding RNAs (lncRNAs) in root tips of the model
legume Medicago truncatula using previously generated nuclear, total polyA, ribosome …

Genome-Wide Identification and Characterization of Long Noncoding RNAs in Populus × canescens Roots Treated With Different Nitrogen Fertilizers

J Zhou, LY Yang, X Chen, WG Shi, SR Deng… - Frontiers in Plant …, 2022 - frontiersin.org
Nitrate (NO3−) and ammonium (NH4+) are the primary forms of inorganic nitrogen acquired
by plant roots. LncRNAs, as key regulators of gene expression, are a class of non-coding …

Genome-Wide Analysis of Long Non-coding RNAs Involved in Nodule Senescence in Medicago truncatula

L Yu, T Huang, X Qi, J Yu, T Wu, Z Luo… - Frontiers in Plant …, 2022 - frontiersin.org
Plant long non-coding RNAs (lncRNAs) are widely accepted to play crucial roles during
diverse biological processes. In recent years, thousands of lncRNAs related to the …

In Silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula

J Wen, BJ Parker, GF Weiller - In silico biology, 2007 - content.iospress.com
Accumulating evidence suggests that that non-coding RNAs (ncRNAs) play key roles in
gene regulation and may form the basis of an inter-gene communication system. Many …

Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data

X Song, L Sun, H Luo, Q Ma, Y Zhao, D Pei - Genes, 2016 - mdpi.com
Numerous sources of evidence suggest that most of the eukaryotic genome is transcribed
into protein-coding mRNAs and also into a large number of non-coding RNAs (ncRNAs) …

Identification and allelic dissection uncover roles of lncRNAs in secondary growth of Populus tomentosa

D Zhou, Q Du, J Chen, Q Wang, D Zhang - DNA research, 2017 - academic.oup.com
Long non-coding RNAs (lncRNAs) function in various biological processes. However, their
roles in secondary growth of plants remain poorly understood. Here, 15,691 lncRNAs were …

Genome-wide identification, characterization, and functional analysis of lncRNAs in Hevea brasiliensis

L Wang, J Wang, H Chen, B Hu - Frontiers in Plant Science, 2022 - frontiersin.org
Natural rubber (NR) is an essential industrial raw material widely used in our life. Hevea
brasiliensis (Reyan7-33-97) is an economic plant producing natural rubber. Long non …

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput …

TZ Wang, M Liu, MG Zhao, R Chen, WH Zhang - BMC plant biology, 2015 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) have been shown to play crucially
regulatory roles in diverse biological processes involving complex mechanisms. However …

Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species

Y Zhu, L Chen, X Hong, H Shi, X Li - BMC genomics, 2022 - Springer
Background Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency
and suffered from many factors like heterogeneous data sources and experimental …

Deciphering shared attributes of plant long non-coding RNAs through a comparative computational approach

VK Yadav, SK Jalmi, S Tiwari, S Kerkar - Scientific Reports, 2023 - nature.com
Over the past decade, long non-coding RNA (lncRNA), which lacks protein-coding potential,
has emerged as an essential regulator of the genome. The present study examined 13,599 …