Application of combinatorial optimization strategies in synthetic biology
G Naseri, MAG Koffas - Nature communications, 2020 - nature.com
In the first wave of synthetic biology, genetic elements, combined into simple circuits, are
used to control individual cellular functions. In the second wave of synthetic biology, the …
used to control individual cellular functions. In the second wave of synthetic biology, the …
Synthetic gene circuits: design with directed evolution
EL Haseltine, FH Arnold - Annu. Rev. Biophys. Biomol. Struct., 2007 - annualreviews.org
Synthetic circuits offer great promise for generating insights into nature's underlying design
principles or forward engineering novel biotechnology applications. However, construction …
principles or forward engineering novel biotechnology applications. However, construction …
Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression
Highlights•We review recent advances in the forward design of genetic circuits.•Advanced
circuit design concepts pave the way for more complex synthetic cellular regulation.•Part …
circuit design concepts pave the way for more complex synthetic cellular regulation.•Part …
Synthetic biology: advancing the design of diverse genetic systems
A major objective of synthetic biology is to make the process of designing genetically
encoded biological systems more systematic, predictable, robust, scalable, and efficient …
encoded biological systems more systematic, predictable, robust, scalable, and efficient …
Computational tools and algorithms for designing customized synthetic genes
N Gould, O Hendy, D Papamichail - Frontiers in bioengineering and …, 2014 - frontiersin.org
Advances in DNA synthesis have enabled the construction of artificial genes, gene circuits,
and genomes of bacterial scale. Freedom in de novo design of synthetic constructs provides …
and genomes of bacterial scale. Freedom in de novo design of synthetic constructs provides …
Evolution-guided optimization of biosynthetic pathways
Engineering biosynthetic pathways for chemical production requires extensive optimization
of the host cellular metabolic machinery. Because it is challenging to specify a priori an …
of the host cellular metabolic machinery. Because it is challenging to specify a priori an …
[HTML][HTML] The evolving art of creating genetic diversity: From directed evolution to synthetic biology
A Currin, S Parker, CJ Robinson, E Takano… - Biotechnology …, 2021 - Elsevier
The ability to engineer biological systems, whether to introduce novel functionality or
improved performance, is a cornerstone of biotechnology and synthetic biology. Typically …
improved performance, is a cornerstone of biotechnology and synthetic biology. Typically …
Next-generation synthetic gene networks
Synthetic biology is focused on the rational construction of biological systems based on
engineering principles. During the field's first decade of development, significant progress …
engineering principles. During the field's first decade of development, significant progress …
Large‐scale identification of genetic design strategies using local search
In the past decade, computational methods have been shown to be well suited to unraveling
the complex web of metabolic reactions in biological systems. Methods based on flux …
the complex web of metabolic reactions in biological systems. Methods based on flux …
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks
Background The field of synthetic biology promises to revolutionize our ability to engineer
biological systems, providing important benefits for a variety of applications. Recent …
biological systems, providing important benefits for a variety of applications. Recent …